PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000147667

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MIKC_MADS

Protein Properties

Length: 472aa MW: 53657.9 Da PI: 8.1531

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000147667	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.3	3.1e-21	90	134	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+tgk MDP0000147667 90 KRLENTNGRQATYAKRKNGIMKKANELSILCDIDIVLLMFSPTGK 134 689****************************************97 PP
2	K-box	14.9	1.1e-06	169	234	22	80
K-box 22 akLkkeienLq..reqRhllG....edLesLs.lkeLqqLeqqLekslkkiRskKnellleqieel 80 + Lkk ++L ++ +lG +L++++ +++L q+e L +sl++iR++K++l ++qi l MDP0000147667 169 EALKKTFKKLDhdVNIQEFLGtscwTSLDKINsVEQLGQMEGSLRESLNQIRTHKENLQKQQIMSL 234 444444444444434444444111157888852688**************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.221	82	134	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.8E-30	82	141	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.41E-24	83	163	No hit	No description
SuperFamily	SSF55455	3.92E-25	83	176	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-17	84	104	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.2E-19	92	135	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-17	104	119	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-17	119	140	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MLEKQKPVYD QRTESEGKEE GDGDAKLKEI AFGXPFCLLL FMPYFFSNIS HKSLILRKGF 60 SIFWTVKEGE FKRKIRGXKC RMGRVKLKIK RLENTNGRQA TYAKRKNGIM KKANELSILC 120 DIDIVLLMFS PTGKPSLCSG KRSSIEEVIA KFAQLTPQER AKRKLESLEA LKKTFKKLDH 180 DVNIQEFLGT SCWTSLDKIN SVEQLGQMEG SLRESLNQIR THKENLQKQQ IMSLECTSQF 240 QNGLHIPFSM NXEQQLQPLS WIPTNESRHM DLPEDTTLLP HRWVIVQKYI LALLGIFVVD 300 MECSASSSFG SYSGYLGTGX NPEISTSEQE NGILNDLSRT APLRLQLGGQ FPYLPYNLNM 360 MTDTKFQPPA EMSPQENPVE YHVNGSFEAP RPEFYPTQHS WASTSGPCAV TMFDEHLFSQ 420 ATTECTAQVQ HINGPIIVIS TLARRNDGAD AQXMKHQTSN ERSFIRSLXI EI

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MLEKQKPVYD QRTESEGKEE GDGDAKLKEI AFGXPFCLLL FMPYFFSNIS HKSLILRKGF  60
SIFWTVKEGE FKRKIRGXKC RMGRVKLKIK RLENTNGRQA TYAKRKNGIM KKANELSILC  120
DIDIVLLMFS PTGKPSLCSG KRSSIEEVIA KFAQLTPQER AKRKLESLEA LKKTFKKLDH  180
DVNIQEFLGT SCWTSLDKIN SVEQLGQMEG SLRESLNQIR THKENLQKQQ IMSLECTSQF  240
QNGLHIPFSM NXEQQLQPLS WIPTNESRHM DLPEDTTLLP HRWVIVQKYI LALLGIFVVD  300
MECSASSSFG SYSGYLGTGX NPEISTSEQE NGILNDLSRT APLRLQLGGQ FPYLPYNLNM  360
MTDTKFQPPA EMSPQENPVE YHVNGSFEAP RPEFYPTQHS WASTSGPCAV TMFDEHLFSQ  420
ATTECTAQVQ HINGPIIVIS TLARRNDGAD AQXMKHQTSN ERSFIRSLXI EI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	8e-13	82	173	1	90	MEF2 CHIMERA
6byy_B	8e-13	82	173	1	90	MEF2 CHIMERA
6byy_C	8e-13	82	173	1	90	MEF2 CHIMERA
6byy_D	8e-13	82	173	1	90	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008339884.2	0.0	agamous-like MADS-box protein AGL30 isoform X4
Swissprot	Q1PFA4	2e-97	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A498HEP1	0.0	A0A498HEP1_MALDO; Uncharacterized protein
STRING	XP_008339884.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-85	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	MDP0000147667

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]