PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000147415
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 523aa    MW: 56925.7 Da    PI: 7.8408
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000147415genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.7e-10134158226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +++ C +++ t tCk+G++CkF H+
  MDP0000147415 134 GEKDCAHYMLTRTCKFGESCKFDHP 158
                    7889********************8 PP
2zf-CCCH26.98.1e-09199223327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + C++f +t  Ck+G rCkF+H++
  MDP0000147415 199 APDCPYFIKTQRCKFGMRCKFNHPK 223
                    589********************96 PP
3zf-CCCH36.86.7e-12246270327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    +++C f+++tG+Ck+G +CkF+H++
  MDP0000147415 246 EPPCAFYLKTGQCKFGVTCKFHHPK 270
                    79*********************96 PP
4zf-CCCH38.42.1e-12317342126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ++++ C+f+++tG CkyG++C+++H+
  MDP0000147415 317 PGEPDCPFYLKTGSCKYGATCRYNHP 342
                    5789*********************9 PP
5zf-CCCH31.72.5e-10410428826
                    GGGGTS--TTTTT-SS-SS CS
        zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                    ++++tG+Ck+G+ CkF+H+
  MDP0000147415 410 YYMKTGECKFGELCKFHHP 428
                    9*****************8 PP
6zf-CCCH38.91.4e-12472495427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    ++C ++++tGtCkyG++CkF H+p
  MDP0000147415 472 VICVYYLKTGTCKYGASCKFDHPP 495
                    58********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.263132160IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034132159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5133159IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8134158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117196224IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013196223IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5199223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5201225IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6243270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46243271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5246271IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9246270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5248269IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-7316343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516316344IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10318342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5321343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4322341IPR000571Zinc finger, CCCH-type
SMARTSM003560.11406429IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.408409430IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-8409428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6467495IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7469495IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-6472493IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9473495IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878473496IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MSSHLYGFGA AAQSATSAAT AAALSSVYSS RALTDSYLSD PALRYYSGSD PFADHHTRAS  60
SMYLPPHLIP HSAWPAPDVE PGVPGVKRPS EALYHQSYMG AYNTIGQEAW YAALAKRPRY  120
EGASTLPIYP QRPGEKDCAH YMLTRTCKFG ESCKFDHPIW VPEGGIPDWK EEDLSAKLLH  180
LEKVPLVAPT EVLPERPGAP DCPYFIKTQR CKFGMRCKFN HPKDKVIASD ASENADVFTL  240
PERPSEPPCA FYLKTGQCKF GVTCKFHHPK DIQIPLANQE NKAGETGTAI KTDGTGFSVK  300
APISFTPALL YNTKELPGEP DCPFYLKTGS CKYGATCRYN HPDRYAINPP IAAISHPIVA  360
TPAAGLNIGV IDPAASIYQT LAQPTVGVXP TVYPQRFGQI ECDICLTLPY YMKTGECKFG  420
ELCKFHHPID RSAVALSAPK AVPVQDANVK LTLAGLPRRE TSIKGRTFLQ GVICVYYLKT  480
GTCKYGASCK FDHPPPVEVM GMGATQGTSG GEAKAGEFPQ EQQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.132260.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4540004e-62AM454000.1 Vitis vinifera contig VV78X082437.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383223.20.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-177C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A498IWQ40.0A0A498IWQ4_MALDO; Uncharacterized protein
STRINGXP_008383223.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-176floral homeotic protein (HUA1)