PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000146933
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YA
Protein Properties Length: 484aa    MW: 54051.9 Da    PI: 9.0807
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000146933genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.91.2e-31262318158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+Rg gGrF
  MDP0000146933 262 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKVRKPYLHESRHQHAMRRARGXGGRF 318
                    69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.9E-35260321IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.721261321IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-27263318IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-23264286IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860266286IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-23295318IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MQPKSEAENR LHAHTVPPSS VYSEPWWQSV GYNPISPTGT GRNVSNTSSL ECPNGLSESN  60
DDQSLSNDEA NEDDDDTAKD SHTTSPRSDS TSYYIWEFAG NYGQDHHNVK HAGSSVPTVR  120
DDCLAQPPQL ELVGHSIACA SNPYQDPCYG GMMAAYGXPP LSFLPLSQTV FLEVWEFGLK  180
TTKKAIFCKP TKILVRSPLC VVLHHGGSGE KQISYNIEPV QLTFLGYDID LILVHLEVYD  240
EGYPPFLGMP HARMPLPLEM AQEPVYVNAK QYQGILRRRQ ARAKAELERK LIKVRKPYLH  300
ESRHQHAMRR ARGXGGRFAK KANGDTSNST GXEKVHRVQN PFRQILPKHG IPPIVNGKQE  360
VPKRTMRMRL TIMQMVVAAX SPMVACRLQY ILHTRAREGK KEIVQASNGE AYLRTRPHRG  420
VLPSSEPLEA DAVDSTRNGA SPPWISLAMC LPGGNSFLAV FLRSRHKRRE GEILKDHLAX  480
VKSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-18262326266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.148076e-70bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008368065.21e-104nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_008368066.21e-104nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_008368067.21e-104nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_008368068.21e-104nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_008368069.21e-104nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_017186772.21e-104nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_017186773.21e-104nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_017186774.21e-104nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_017186775.21e-104nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLA0A498K4Q21e-103A0A498K4Q2_MALDO; Uncharacterized protein
STRINGXP_008368065.11e-103(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.18e-32nuclear factor Y, subunit A9