PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000146605
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YC
Protein Properties Length: 641aa    MW: 70704.1 Da    PI: 8.5106
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000146605genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1741.6e-54501541102
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql++fw+ q   ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflv
  MDP0000146605  50 QLQMFWTFQrqeIESVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLV 145
                    89****9887789*********************************************************************************** PP

          NF-YC  94 divprdelk 102
                    divprde+k
  MDP0000146605 146 DIVPRDEIK 154
                    ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-3241144IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.2E-3664136IPR009072Histone-fold
PfamPF008084.0E-2072135IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
TIGRFAMsTIGR016272.5E-74429633IPR006514IRX15/IRX15L/IGXM
PfamPF046691.4E-55441621IPR021148Polysaccharide biosynthesis domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045492Biological Processxylan biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MDPNPNTATT AAAAAPTQQQ PQAQSSPYPA TQSSVPAPPF HHLLQQQQQQ LQMFWTFQRQ  60
EIESVNDFKN HQLPLARIKK IMKADEDVRM ISAEAPVLFA KACELFILEL TIRSWLHAEE  120
NKRRTLQKND IAAAITRTDI FDFLVDIVPR DEIKEEAVGL GGMVGATASG VPYFYPPMGQ  180
PAGGPGGMMI GRPAVDPTGV YGVQPPSQAW QSVWQTAADD GSYGSGGSSG QGNLDGQSVL  240
MVYGYACFGK IGGGEYGXXV IPQREKKDVW KSLPETFQSK SRVILCQPAA TWSFSLTAST  300
IKCPTTRHLP TRRGCDGGCG GAESKEKPEK MPPEVPHFCS FVAPLVRFTS AVSPQEQENK  360
AHRHNQSRGS KAMNFSRTKL IPFLVLILSI VSVLRLVRIA VTTSPPPPPT LGKTCSFPFI  420
CTKFPAETNA SANTSALRKK EYQLLSNLIS QKAPCNLLIF GLEPQYVSLS SINTGGTTVF  480
LEDDQNKIST LKPNSNTTRV YKVDYQIPAK EAYKLLQHAR GNPDCKPKLL QQSKCQLALK  540
NLPQEVYELK WDVVVVDGPS GNTPEEPGRM SSIYSASMIA RNANITHVVV HDVDRMIEKW  600
FSWEFLCDEN LVSSKXRLWN FRITGQLNST IFCPAKEITI E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-5158150395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-108AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.27e-86nuclear factor Y, subunit C4