PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000146497
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 425aa    MW: 46557.4 Da    PI: 9.3195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000146497genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05189211223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +Cp Cg+ F   +nL+ H+ + H
  MDP0000146497 189 SCPECGEIFMKAENLELHQAVrH 211
                    8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182188216IPR007087Zinc finger, C2H2
PROSITE patternPS000280188211IPR007087Zinc finger, C2H2
SuperFamilySSF563992.01E-21213423No hitNo description
Gene3DG3DSA:3.90.228.101.8E-13214422IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MASSHKPKTQ RKPTKQTHQK LQKHHENKNP KPRKAEEKPA EKPPYWSVVR GLLTCKHLQP  60
VQLPQKQPNE QQAMEEANNT AXKCKKMRCS GSLCNNTKIM QXPELLASPE VHKKRASSSM  120
GSSSNSNEAS SRSMKAPLHE INGVVSTSSS SFSAVSSSSN NNSSAGGGWW FDPVLGFARD  180
PSLRGSICSC PECGEIFMKA ENLELHQAVR HAVSELGPED TSKNIVEIIF QSSWLKKQTP  240
ICKIDRILKV HNTQKTITKF EEYRDSIKAK ATKLPKKHPR CIADGNELLR FHCTTFACSL  300
GLNGSSNLCN SIPHCNVCSI IKNGFNKFSG ELTEQGILTT ATSGRAHDKA VVAAEEGDKX  360
AMLVCRVIAG RVKKNLEGSV GNGNVGMEEY DSVAGAVGVY SNLDELYVFN PKAILPCFVV  420
IYGGY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028962963.10.0uncharacterized protein LOC103441591
TrEMBLA0A498JC140.0A0A498JC14_MALDO; Uncharacterized protein
STRINGXP_009366983.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.19e-92C2H2-like zinc finger protein