PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000146360
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 351aa    MW: 39438.4 Da    PI: 6.0051
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000146360genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.62.5e-28130190259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+v+eitY+g+H+++
  MDP0000146360 130 EDGHSWRKYGQKDILGAKHPRSYYRCTYRntqSCWATKQVQRSDEDPTVFEITYKGKHTCS 190
                    8***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-28122190IPR003657WRKY domain
SuperFamilySSF1182905.49E-25128190IPR003657WRKY domain
SMARTSM007742.6E-39129191IPR003657WRKY domain
PROSITE profilePS5081121.459130187IPR003657WRKY domain
PfamPF031062.0E-26130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDSGKSWEQK SLVNEIIEGM ELAKQLRLCL NAKSSADTKQ FLVQRILSSY EKALLMLKCG  60
GSPQSPIRAI ASAPESLMSA NEGPCCVDNN RSLQDHQDLT AVSKKRKEMA KWTEHVTRVI  120
SENGIEGPHE DGHSWRKYGQ KDILGAKHPR SYYRCTYRNT QSCWATKQVQ RSDEDPTVFE  180
ITYKGKHTCS HGGSSVPPPP SPEKQERKRH NHNNTYQQQQ SQGNQMSFPT NLRVNTENLD  240
DRENTASPFS FTSSPFGSIS DDAFLSSMLD DQSLFDHFNQ SLLSPAAGGS NYYFELPSQM  300
RNIAGNEQRS ESDIISANNS STNSPIPDMD FXLEPVELDP YFPFDSPGFF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19130189968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.28610.0root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959531.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 53
TrEMBLA0A498JJJ90.0A0A498JJJ9_MALDO; Uncharacterized protein
STRINGXP_008343700.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-59WRKY family protein