PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000146339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 170aa MW: 19554.4 Da PI: 9.9528 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.7 | 1.7e-17 | 17 | 69 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++q++ Le+ F++n+++ e++ LAk+l ++ rqV +W+qN+Ra++k MDP0000146339 17 KKRLTQDQVKLLERSFASNKKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWK 69 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 105.9 | 3e-34 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qvklLE+sF +++kLeperK la++L + prqva+W+qn+RAR+kt+ lE +y+a+++++++ +e++rLek+ve+Lr elk+ MDP0000146339 16 NKKRLTQDQVKLLERSFASNKKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWKTQSLELNYNAIQAKLESALAEKRRLEKDVERLRGELKR 107 79*************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.775 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.0E-13 | 14 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.70E-13 | 17 | 72 | No hit | No description |
SuperFamily | SSF46689 | 3.34E-16 | 17 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 17 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.9E-15 | 17 | 69 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MDFFQTSNHK NQFQHNKKRL TQDQVKLLER SFASNKKLEP ERKLLLAKQL AIPPRQVAIW 60 YQNKRARWKT QSLELNYNAI QAKLESALAE KRRLEKDVER LRGELKRAHE VVLALNQQAQ 120 VFPANPVICS VFDSSNCSDE VGVGSSSMQP HGDHAVKQLE ELYACLIGMQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008365122.1 | 1e-124 | homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A498IMF7 | 1e-123 | A0A498IMF7_MALDO; Uncharacterized protein | ||||
STRING | XP_008365122.1 | 1e-123 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 5e-38 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000146339 |