PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000146231
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 403aa    MW: 45083.3 Da    PI: 7.8298
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000146231genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.42.8e-21953145
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                   kr en+  rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+tgk
  MDP0000146231  9 KRLENTNGRQATYAKRKNGIMKKANELSILCDIDIILLMFSPTGK 53
                   689****************************************97 PP
2K-box14.21.9e-061111801181
          K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                    +++ e l+++++ L+ ++++++  +R   + +L++++ +++L ++e+ L +sl++iR++K++l ++q+   +
  MDP0000146231 111 SQTIEDLSNQSSLLQTQLSEIK--KRLSCWTSLDKINsVEQLGHMEDSLRESLNQIRTHKENLQKQQLMSIK 180
                    3444445555555555555444..47889******973678**********************999987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.0E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.137153IPR002100Transcription factor, MADS-box
CDDcd001206.46E-25254No hitNo description
SuperFamilySSF554551.83E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-17323IPR002100Transcription factor, MADS-box
PfamPF003198.6E-191154IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-173859IPR002100Transcription factor, MADS-box
PfamPF015821.6E-11331395IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010410.544339403IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101403.0E-5341394IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522009.29E-9342394IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KANELSILCD IDIILLMFSP TGKPSLCCGK  60
RSSIEDVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLSNQ  120
SSLLQTQLSE IKKRLSCWTS LDKINSVEQL GHMEDSLRES LNQIRTHKEN LQKQQLMSIK  180
CTSQFQNGLH IPFSMNAEQQ LQPLSWIPTN ESRHIVLPED ATLLPHRDME CSASSSFGSY  240
SGYLGTGKSP EISTSGQENG ILNDLSRTAP LNLQLGGHIP YLPYNLNMLT DTKFQPPAEM  300
SPQENPVEYQ VNGSFEAPRP EFYPTQHNWA STSGPCAVTM FDEHLYSQVL KDAGINVFNG  360
DEEIRQGQNI TAVLAQAIQG SRISVIVFSR SYAAHQLGVL KSL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389454.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_008389455.10.0agamous-like MADS-box protein AGL30 isoform X2
RefseqXP_028947652.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_028947653.10.0agamous-like MADS-box protein AGL30 isoform X1
SwissprotQ1PFA41e-121AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A2H4G3740.0A0A2H4G374_PRUPE; MADS-box protein 17
STRINGXP_008389454.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-91AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]