PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000145953 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 254aa MW: 28811.1 Da PI: 7.37 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.6 | 7.1e-30 | 130 | 187 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers ++p++++itY+ eHnh MDP0000145953 130 SDVWAWRKYGQKPIKGSPHPRSYYRCSSSkGCSARKQVERSCSNPETFIITYTAEHNH 187 79*************************998**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.2E-30 | 115 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.902 | 124 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-25 | 127 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-33 | 129 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-25 | 131 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MENWDLQAVV RGCNTDIDEV MEDSQIPYFF APLSLQEDDE LFQAYFPQAF EATTTLAELE 60 ELYKPFYPVN QITSPPTILA SSISVPQEVI TEAPKLIKNM KESAPICKRI SRKNQNKRVX 120 KEVKAEDLFS DVWAWRKYGQ KPIKGSPHPR SYYRCSSSKG CSARKQVERS CSNPETFIIT 180 YTAEHNHVHP TRRNSLAGST RSKFPSSRNK DKCSSSSNSP ATPNLAASIE DNREFVESAD 240 INIVKEEAKF LERG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-18 | 127 | 190 | 15 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-18 | 127 | 190 | 15 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30231 | 1e-151 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU013683 | 1e-112 | GU013683.1 Malus x domestica transcription factor WRKY (WRKY) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008363282.2 | 0.0 | probable WRKY transcription factor 29 | ||||
Swissprot | Q9SUS1 | 9e-56 | WRK29_ARATH; Probable WRKY transcription factor 29 | ||||
TrEMBL | A0A498I4Q7 | 0.0 | A0A498I4Q7_MALDO; Uncharacterized protein | ||||
STRING | XP_008363282.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6217 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 1e-52 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000145953 |