PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000145790
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 326aa    MW: 36691.5 Da    PI: 9.5532
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000145790genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33e-32203256255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  MDP0000145790 203 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 256
                    9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.34E-15200256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28201256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23203256IPR006447Myb domain, plants
PfamPF002492.0E-7204255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSSSSSSTSW RRSSHQRHQE GVDLGFWRRA LDSRNSTSDE  60
LSNTNHRPQH YNNITASTSC NGVNGNLFHP FQFQQSHYFP QVPQTDVQQE LQQSDELLGF  120
LRPIRGIPLY QNPPPPPPNN FFPFSSSQKP VNFDNNSATS TSTITSSTPL FQAAAHHHQG  180
HHGGLLRSRI FSRFPAKRSI RAPRMRWTTT LHARFVHAVE LLGGHERATP KSVLELMDVK  240
DLTLAHVKSH LQMYRTVKTT DKAAASSGQS DVYENASSGD TTEDIMYELQ NPRRSCEQLP  300
SAQHGSRSTT VQDNKEYYGL WSNSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16204258357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16204258357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16204258357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16204258357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16204258458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16204258458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.253290.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028960270.10.0probable transcription factor KAN2 isoform X2
SwissprotQ9C6165e-82KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A498JLY70.0A0A498JLY7_MALDO; Uncharacterized protein
STRINGXP_008373521.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.17e-61G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]