PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000144266
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 365aa    MW: 40796.9 Da    PI: 8.5899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000144266genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-06217236120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C++C+k+F+r  nL+ H+
  MDP0000144266 217 FSCSICSKTFNRYNNLQMHM 236
                    89*****************9 PP
2zf-C2H215.83.9e-05302324123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C+ Cgk Fs k + ++H +++
  MDP0000144266 302 FMCKRCGKAFSVKGDWRTHEKNC 324
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.89E-6210239No hitNo description
Gene3DG3DSA:3.30.160.607.3E-5217236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.069217239IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-4217236IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.866217244IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SuperFamilySSF576674.46E-6284322No hitNo description
Gene3DG3DSA:3.30.160.601.6E-4298322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035557302322IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954302322IPR007087Zinc finger, C2H2
SMARTSM00355150328351IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MADPYNSSNL YNNGWINFMP LRPHHCPSLL STATFFANSS RGTPINLNIS NPPHSYSSHN  60
LFIDYKSSNS QSQMPSSIND HINVSSPPLK EALPLLNNLL SPRGVLEEER GHEPSSSSTI  120
TPMEVETMNK YDAVYDDGDD DENLSVALHI GLPSSSNSGN VQSQFADHDH ITEGVISSTI  180
SHVVSSGNPI VAVDRLNKGG NYWIPTPAQI LSGPTQFSCS ICSKTFNRYN NLQMHMWGHG  240
SQYRKGPDSL KRTQPTAMLR LPCYCCAPGC KHNIDNPIGA KPLKDFRTLQ VHYKRKHGVR  300
SFMCKRCGKA FSVKGDWRTH EKNCGKIWYC ICGSDFKHKR SLKDHIKAFG HGHGSFDIKC  360
FEERR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252DSLKRT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364992.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ8W0301e-103ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A498KAR90.0A0A498KAR9_MALDO; Uncharacterized protein
STRINGXP_008349934.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]