PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000142582
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 335aa    MW: 37757.6 Da    PI: 9.0854
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000142582genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP123.31e-3865141278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    C v++C+adls+++eyhrrh+vCe hsk+pvv+v+g+++rfCqqCsr h+l efD++k+sCr+rL++hn+rrrk+++
  MDP0000142582  65 CLVDDCRADLSRCREYHRRHRVCELHSKTPVVVVKGEQKRFCQQCSRVHSLVEFDDGKKSCRKRLNGHNQRRRKPKP 141
                    **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-2960126IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.28262139IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-3663145IPR004333Transcription factor, SBP-box
PfamPF031101.7E-2865138IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEWDFKDSDL DALVGSSISQ PQMKNRPAES LGLEFKKLQE DSIKLSSSRR INGSKNGSDH  60
LKVLCLVDDC RADLSRCREY HRRHRVCELH SKTPVVVVKG EQKRFCQQCS RVHSLVEFDD  120
GKKSCRKRLN GHNQRRRKPK PESFYFSSHN FFPTYKGTRI LQFSNPQVCA TTNLRCMWPV  180
EDKKGAESMH SNRHHQWLRA TDEPKPPNSF NGAGHEPFIF LQASDPKAAA GNRAAPQAFT  240
CQQQPLPITA AAGSPKSTRG CALYLLSSHP TQNPVTGLNH LARSTVTTTH PGQILDPILQ  300
MNRGFSEFSC SHDEEDRTVI PEMMFLPGPD GFSNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2556138384squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.110021e-105bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341290.30.0putative squamosa promoter-binding-like protein 19 isoform X2
TrEMBLA0A498HKH20.0A0A498HKH2_MALDO; Uncharacterized protein
STRINGXP_008341290.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-42SBP family protein