PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000142494

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 431aa MW: 48481.6 Da PI: 7.2966

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000142494	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	221	238	1	18
EEETTTTEEESSHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkr 18 ++C++C+k+F+r nL+r MDP0000142494 221 FSCSICSKTFNRYNNLQR 238 89**************97 PP
2	zf-C2H2	15.5	4.8e-05	348	370	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk Fs k + ++H +++ MDP0000142494 348 FMCKRCGKAFSVKGDWRTHEKNC 370 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.78E-6	330	368	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-4	344	368	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.954	348	368	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MADPYNSSNL DNNGWINFMP LHPHHFPSLL STATSSANST RSSPFNFSIS NPPHTYSSHN 60 FFTDKKSSNI QTQMPSSIND HINVSSPPLK EALPLLNNLL SPRGVLEEKH GHEPSNSSTI 120 TPMEEETRNK DHAVYDDGDD SGDDEDNLIV ALHLGLPSSS NXGNVQSQFA DQVHNKEGVI 180 SSSNSDVVSS GNPSVAVDRL NKGDRYWIPT PSQILIGPTQ FSCSICSKTF NRYNNLQRSR 240 TAFSKGQDEG DGEIIVYINW WQLDIFGDLV TSFLTRNGKM HMWGHGSQYR EGPNSLKRTQ 300 PTAMLRLRCY CCAPGCKHNI DNPRGAKPLK DFRTLQVHYK RKHGVRSFMC KRCGKAFSVK 360 GDWRTHEKNC GKIWYCICGS DFKQKRSLKD HIKAFGRGHG SFDIECFEEE DEPASEIEHD 420 AEASRWYTSQ N

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MADPYNSSNL DNNGWINFMP LHPHHFPSLL STATSSANST RSSPFNFSIS NPPHTYSSHN  60
FFTDKKSSNI QTQMPSSIND HINVSSPPLK EALPLLNNLL SPRGVLEEKH GHEPSNSSTI  120
TPMEEETRNK DHAVYDDGDD SGDDEDNLIV ALHLGLPSSS NXGNVQSQFA DQVHNKEGVI  180
SSSNSDVVSS GNPSVAVDRL NKGDRYWIPT PSQILIGPTQ FSCSICSKTF NRYNNLQRSR  240
TAFSKGQDEG DGEIIVYINW WQLDIFGDLV TSFLTRNGKM HMWGHGSQYR EGPNSLKRTQ  300
PTAMLRLRCY CCAPGCKHNI DNPRGAKPLK DFRTLQVHYK RKHGVRSFMC KRCGKAFSVK  360
GDWRTHEKNC GKIWYCICGS DFKQKRSLKD HIKAFGRGHG SFDIECFEEE DEPASEIEHD  420
AEASRWYTSQ N

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM485732	1e-33	AM485732.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X068454.12, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008375258.2	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-102	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A498JEH0	0.0	A0A498JEH0_MALDO; Uncharacterized protein
STRING	XP_008375258.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF37930	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-101	C2H2 family protein

Link Out ? help Back to Top
Phytozome	MDP0000142494

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]