PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000142146

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 537aa MW: 59489 Da PI: 7.3154

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000142146	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.7	2.3e-32	319	373	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHerF+eav++L G+ekAtPk +l++m+v+gLt++hvkSHLQkYRl MDP0000142146 319 RPRMRWTPELHERFIEAVNRLDGAEKATPKGVLKAMNVEGLTIYHVKSHLQKYRL 373 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.306	316	376	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-30	318	374	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-17	318	373	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-24	320	374	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-9	321	372	IPR001005	SANT/Myb domain
Pfam	PF14379	6.7E-23	409	456	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MAVFACYPFR IVIRCREIML ITCFGGLFCR SSPYNLVXPN YWFRIYRFPP VEVGILHHVF 60 DRLKKAELSS AIMSHHGVIX VXQSETTKGV KPSYCNSPSP IHDFLGSESQ GRSVTASDCS 120 SPRVSPFIRE KSFGSPTNMQ GSPVQHSKSA FSRSSVFCTS LHQSSSSSSE TSRQLGNLPF 180 LPHPPTYGQS ISAVDSKSPL LFSEDKSNQY DDEQSEDLMK DFLNLHGDSS HGNFHGISYG 240 SDTLALTEQL ELQFLSDQLD IAITDNGENP GLDEIYEIPQ PSPKPAIGLT TCSEGCRLTT 300 PLVDALTSHP SPGPASAHRP RMRWTPELHE RFIEAVNRLD GAEKATPKGV LKAMNVEGLT 360 IYHVKSHLQK YRLARYMPEK KEDKKASSSE EKKATSTINE SDGRRKGSIH ITEALRMQME 420 VQKQLHEQLE VQRVLQLRIE EHAKYLRKIL ENQQKAGSAL LSPQALSSQT TNSAHVSAQX 480 PSSTCVSPPQ PAVSDSSSPQ SLKHKATDCS ASEPPTCTKK PRLEERPDEG VVENPQL

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MAVFACYPFR IVIRCREIML ITCFGGLFCR SSPYNLVXPN YWFRIYRFPP VEVGILHHVF  60
DRLKKAELSS AIMSHHGVIX VXQSETTKGV KPSYCNSPSP IHDFLGSESQ GRSVTASDCS  120
SPRVSPFIRE KSFGSPTNMQ GSPVQHSKSA FSRSSVFCTS LHQSSSSSSE TSRQLGNLPF  180
LPHPPTYGQS ISAVDSKSPL LFSEDKSNQY DDEQSEDLMK DFLNLHGDSS HGNFHGISYG  240
SDTLALTEQL ELQFLSDQLD IAITDNGENP GLDEIYEIPQ PSPKPAIGLT TCSEGCRLTT  300
PLVDALTSHP SPGPASAHRP RMRWTPELHE RFIEAVNRLD GAEKATPKGV LKAMNVEGLT  360
IYHVKSHLQK YRLARYMPEK KEDKKASSSE EKKATSTINE SDGRRKGSIH ITEALRMQME  420
VQKQLHEQLE VQRVLQLRIE EHAKYLRKIL ENQQKAGSAL LSPQALSSQT TNSAHVSAQX  480
PSSTCVSPPQ PAVSDSSSPQ SLKHKATDCS ASEPPTCTKK PRLEERPDEG VVENPQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-26	319	376	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-26	319	376	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-26	319	376	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-26	319	376	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-26	319	376	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-26	319	376	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-26	319	376	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-26	319	376	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11930	0.0	fruit\| leaf

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017183218.2	0.0	myb family transcription factor PHL6-like isoform X2
Refseq	XP_028953632.1	0.0	myb family transcription factor PHL6-like isoform X1
Swissprot	Q949U2	1e-130	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A498HDN5	0.0	A0A498HDN5_MALDO; Uncharacterized protein
STRING	XP_008355262.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13469	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-120	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000142146

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]