PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000141097
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 359aa    MW: 38940.4 Da    PI: 7.0292
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000141097genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-091231601954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  MDP0000141097 123 FEHflHPYPSDADKHLLARQTGLSXNQVSNWFINARVR 160
                    665559******************************88 PP
2BELL86.43.3e-281541972
           BELL 19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                   Vd+rY++y+eq+q+v+++F+ v+g g+a pYt+lA+ka+SrhFrcLkd  + q+
  MDP0000141097  1 VDRRYNHYCEQMQMVVNAFDLVMGFGAAVPYTALAQKAMSRHFRCLKDTXTAQL 54
                   89**********************************************988885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-4152IPR006563POX domain
PfamPF075263.4E-24149IPR006563POX domain
PROSITE profilePS5007112.552101164IPR001356Homeobox domain
CDDcd000867.12E-13104165No hitNo description
SMARTSM003892.8E-9104168IPR001356Homeobox domain
SuperFamilySSF466891.54E-17105171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-29107170IPR009057Homeodomain-like
PfamPF059202.6E-18121160IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
VDRRYNHYCE QMQMVVNAFD LVMGFGAAVP YTALAQKAMS RHFRCLKDTX TAQLKHSCEL  60
LGEKDGAGTS GITKGETPRL KLLEQSLRQQ RAFHQMGMME QEAWRPQRGL PERSVNILRA  120
WLFEHFLHPY PSDADKHLLA RQTGLSXNQV SNWFINARVR LWKPMVEEMY QQEANEEEEE  180
VGGGGGGGAV SATADQERER NXNAGFSAQT PTPTMTTATT PPPTTNSPTG KRSDINASEN  240
DSSLIAINRH QQQQQHHPMM ATTTSSAVAP PASQCFTAAA ADDTCRSYGT TSGNANIAAH  300
HDHPNSSNIG SSKLTSFGTT TAAGDVSLTL GLRHAGGGGG SNMPDKNSSS FSIRDFGGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-17110167158Homeobox protein Meis1
4xrs_B1e-17110167158Homeobox protein Meis1
5bng_A2e-17110168159Homeobox protein Meis2
5bng_B2e-17110168159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29450.0bud| fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0537690.0AF053769.1 Malus x domestica homeodomain protein (Mdh1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950159.10.0BEL1-like homeodomain protein 2
SwissprotQ9SW801e-124BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A498HX670.0A0A498HX67_MALDO; Uncharacterized protein
STRINGXP_008338177.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-122BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]