PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000140484
Common NameCOL8
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 393aa    MW: 43562.9 Da    PI: 5.4109
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000140484genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.7e-061858438
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                   r+C+++     + +C+ ++ +lC  C  ++H        H+
  MDP0000140484 18 RVCDTCXAAACTVYCRADSAYLCSGCDATIHAAnrvasrHE 58
                   79******99*********************5555666666 PP
2zf-B_box29.51.5e-0960105342
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     ++C+ +e+ ++ + C+ +   lC  C   +H+       H++vp+
  MDP0000140484  60 VWVCEACERAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 105
                    689*****************************66899999**9997 PP
3CCT69.87.2e-24324367144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  MDP0000140484 324 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 367
                    9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.9E-71562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.311562IPR000315B-box-type zinc finger
CDDcd000218.29E-71862No hitNo description
PROSITE profilePS5011911.30558105IPR000315B-box-type zinc finger
PfamPF006431.4E-759105IPR000315B-box-type zinc finger
CDDcd000213.18E-961105No hitNo description
SMARTSM003361.8E-1063105IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648324366IPR010402CCT domain
PfamPF062037.8E-18324366IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MLKEDQSNGT ATANNWARVC DTCXAAACTV YCRADSAYLC SGCDATIHAA NRVASRHERV  60
WVCEACERAP AAFLCKADAA SLCTACDADI HSANPLARRH QRVPILPISG CLYSSQATEQ  120
GEMGVAVSAG AETEDGFLSQ EGDDTIYEED EDEAASWLLL NPVKNNNNNN NTNTQNNGFF  180
FGAEVDEYLD LVEYNTCADQ NNQFTDHHQQ HDQQQQQQYG VPYKNYGGDS VVPIHQHGEV  240
GKAHQLQKQS FHQLGLEYES SKAAYSYNGS LSHSVSVSSM DVGVVPDSTM SDISISHPRT  300
PKGTIDLFSG PTIQMPTQLS PMDREARVLR YREKKKTRKF EKTIRYASRK AYAETRPRIK  360
GRFAKRTEME VEVDQMFATS LMAENGYGIV PSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.142220.0bud| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development.
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341828.20.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-146COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A498H9Z20.0A0A498H9Z2_MALDO; Uncharacterized protein
TrEMBLD9ZIX40.0D9ZIX4_MALDO; COL domain class transcription factor
STRINGXP_008341828.10.0(Malus domestica)
STRINGXP_008368480.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-114CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]