PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000139862

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

CAMTA

Protein Properties

Length: 1111aa MW: 124087 Da PI: 6.2289

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000139862	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	160.9	2.4e-50	20	150	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpks..............gsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlyc 83 ++ ++rwl++ ei++iL nfek+++++e++++p+s gsl L++rk++ryfrkDG++w+kk+dgktv+E+hekLKvg+v+vl+c MDP0000139862 20 VEAQHRWLRPAEICEILSNFEKFQISSEPPNKPPSmrtfwcgtfstmpgGSLYLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHEKLKVGSVDVLHC 115 5669*************************9976555555555555558999*************************************** PP CG-1 84 yYahseenptfqrrcywlLeeelekivlvhylevk 118 yYah+e++++fqrrcyw+Le++l +iv+vhyl+vk MDP0000139862 116 YYAHGEDDESFQRRCYWMLEQDLMHIVFVHYLQVK 150 ******************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.366	15	155	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.6E-76	18	150	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-42	21	148	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	9.3E-5	543	636	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	5.29E-16	550	635	IPR014756	Immunoglobulin E-set
SMART	SM00015	13	934	956	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.078	935	964	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.04E-7	935	985	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00612	0.0046	937	955	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0071	957	979	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.212	958	982	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.4E-4	960	979	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1111 aa Download sequence Send to blast
MSESGSYPQG PRLDFQQLLV EAQHRWLRPA EICEILSNFE KFQISSEPPN KPPSMRTFWC 60 GTFSTMPGGS LYLFDRKVLR YFRKDGHNWR KKRDGKTVKE AHEKLKVGSV DVLHCYYAHG 120 EDDESFQRRC YWMLEQDLMH IVFVHYLQVK DRFVENRGGV QKKKVQRKER RASSFTIAVC 180 MIKMPCTVQI FDLGHGNRAN AGGIRENDEV AADLQKGSPW TSSPSNSNGR APSGYTDYAS 240 PSSTLTSSWE DVDSGDSRQA SSLFHSVFES PKMGNGPLVD NAEIDPSLHS SLKNHDGQSS 300 IHGVYRPEFD KDQHYFTDDS TCVIDSQKTL GVGSWEEILE QCTMGLHDGT SHASMSSTQI 360 SSAGVPLEQQ TSGNNLLKEE FGSSLPLQTN WQTSKRAEFP LGDNSLQLPE WSLDQSVNLQ 420 RTLDANLSNA PDLVGAHLNQ RNEQLVQDNL QAQLTNAESQ SLIISSSEHD VPKDGNINYA 480 FTLRQQLLDR EEGLKKVDSF SRWVSKELGE VDDLQMQSSS GISWITAECG DVVDDSSLSP 540 SISQDQLFSI VDFSPKWAYT DSEIEILVFG TFLVSQKEVT KYSWSCMFGE VEVPAKVLAS 600 GVLFCFAPPH SAGQVPFYVT CSNRLACSEV REFDYQVGST KGLDMTDICN DTAHEMHLHL 660 RLESLLSLRS VSPSGHLFGG VKENRNIISK IISLKEEEDY LHAAEPTVAN YLLQNEGMEH 720 LIKLMKEKLY TWLLYKAIED GKGPSVLDAE GQGVLHLAAA LSYNWAIKPT VTAGTVAVLV 780 SLGADPGALT DPSPEVPLGR TPADLASVNS HKGISGFLAE SSLTTFLKSL TMNDAKEDSA 840 AEISGTKVVK TFSERIATPV SYGDMPDALS LKDSLTAVTN ATQAADRIQQ MFRMLSFERR 900 RITEHDIDEF GMPDERAISL ITSKSHKVGP VKGFAHTAAV QIQKKFRGWK KRKEFLIIRQ 960 RIVKIQAHVR GHQVRKQYKA ITWSVGILEK VILRWRRKGT GLRGFRPDAV AKIPSPQPVP 1020 SNEDDYDFLK KGRKQTEERL QKALTRVKSM VQYPEGRAQY RRLLNVVEGF RETKVSGMAV 1080 EGSEEKAEGG EDLIDIDKLL DDDTFMSIAF D

Sequence ? help Back to Top

Protein Sequence Length: 1111 aa Download sequence Send to blast

MSESGSYPQG PRLDFQQLLV EAQHRWLRPA EICEILSNFE KFQISSEPPN KPPSMRTFWC  60
GTFSTMPGGS LYLFDRKVLR YFRKDGHNWR KKRDGKTVKE AHEKLKVGSV DVLHCYYAHG  120
EDDESFQRRC YWMLEQDLMH IVFVHYLQVK DRFVENRGGV QKKKVQRKER RASSFTIAVC  180
MIKMPCTVQI FDLGHGNRAN AGGIRENDEV AADLQKGSPW TSSPSNSNGR APSGYTDYAS  240
PSSTLTSSWE DVDSGDSRQA SSLFHSVFES PKMGNGPLVD NAEIDPSLHS SLKNHDGQSS  300
IHGVYRPEFD KDQHYFTDDS TCVIDSQKTL GVGSWEEILE QCTMGLHDGT SHASMSSTQI  360
SSAGVPLEQQ TSGNNLLKEE FGSSLPLQTN WQTSKRAEFP LGDNSLQLPE WSLDQSVNLQ  420
RTLDANLSNA PDLVGAHLNQ RNEQLVQDNL QAQLTNAESQ SLIISSSEHD VPKDGNINYA  480
FTLRQQLLDR EEGLKKVDSF SRWVSKELGE VDDLQMQSSS GISWITAECG DVVDDSSLSP  540
SISQDQLFSI VDFSPKWAYT DSEIEILVFG TFLVSQKEVT KYSWSCMFGE VEVPAKVLAS  600
GVLFCFAPPH SAGQVPFYVT CSNRLACSEV REFDYQVGST KGLDMTDICN DTAHEMHLHL  660
RLESLLSLRS VSPSGHLFGG VKENRNIISK IISLKEEEDY LHAAEPTVAN YLLQNEGMEH  720
LIKLMKEKLY TWLLYKAIED GKGPSVLDAE GQGVLHLAAA LSYNWAIKPT VTAGTVAVLV  780
SLGADPGALT DPSPEVPLGR TPADLASVNS HKGISGFLAE SSLTTFLKSL TMNDAKEDSA  840
AEISGTKVVK TFSERIATPV SYGDMPDALS LKDSLTAVTN ATQAADRIQQ MFRMLSFERR  900
RITEHDIDEF GMPDERAISL ITSKSHKVGP VKGFAHTAAV QIQKKFRGWK KRKEFLIIRQ  960
RIVKIQAHVR GHQVRKQYKA ITWSVGILEK VILRWRRKGT GLRGFRPDAV AKIPSPQPVP  1020
SNEDDYDFLK KGRKQTEERL QKALTRVKSM VQYPEGRAQY RRLLNVVEGF RETKVSGMAV  1080
EGSEEKAEGG EDLIDIDKLL DDDTFMSIAF D

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.9643	0.0	bud\| cell culture\| fruit\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008373189.1	0.0	calmodulin-binding transcription activator 2-like
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A498K4W3	0.0	A0A498K4W3_MALDO; Uncharacterized protein
STRING	XP_008373189.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	MDP0000139862

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]