PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000139807 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 222aa MW: 24323.6 Da PI: 7.1976 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.8 | 4.7e-35 | 58 | 152 | 4 | 89 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.........k 89 ++ + ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+++ +a+ ++ s s+s++ +s + + MDP0000139807 58 SRRNTRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTLPAEPISTTSPSVSSQMPSVPcrvqplkslR 152 67899*********************************************************999997776666666666555555555554431 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-29 | 61 | 149 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.963 | 62 | 116 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MASEMALQPL HKLEDRKPTV LPTAVLTSAT IQTAPSLQHS QLSDLQLQAQ PKPQKQVSRR 60 NTRDRHTKVN GRGRRVRMPA MCAARIFQLT RELGHRSDGE TIEWLLRHAE PSIIAATGSG 120 TLPAEPISTT SPSVSSQMPS VPCRVQPLKS LRSSGQFLYP AAAQAHQAMQ LQLDLCQPMG 180 VDYNAGYRHM PFTSLLLQTG ESEVEEGQPE EEVVGVGIGD DE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008387577.1 | 1e-163 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 3e-37 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A498IFK3 | 1e-161 | A0A498IFK3_MALDO; Uncharacterized protein | ||||
STRING | XP_008387577.1 | 1e-162 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 7e-35 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000139807 |