PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000139446
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 270aa    MW: 29672.8 Da    PI: 6.7154
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000139446genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-174695255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ykGVr++  +g+WvAeIr+p   + r    +lg+++t +eAa a++aa++kl+g
  MDP0000139446 46 TYKGVRQRM-WGKWVAEIREP---N-RgPXLWLGTYDTSYEAALAYDAAARKLYG 95
                   69****999.**********8...2.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-1945105No hitNo description
SMARTSM003805.3E-3346109IPR001471AP2/ERF domain
PfamPF008473.7E-124695IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-2846105IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1946104IPR016177DNA-binding domain
PROSITE profilePS5103220.8946103IPR001471AP2/ERF domain
PRINTSPR003679.1E-84758IPR001471AP2/ERF domain
PRINTSPR003679.1E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSKWEMSDGS SSVGVPEKKP AKLPAQGSSR KGCMRGKGGP ENAMCTYKGV RQRMWGKWVA  60
EIREPNRGPX LWLGTYDTSY EAALAYDAAA RKLYGSEAQL NLPDQQAPKY HPHQLNQHPQ  120
HQVFPSSANP RVPPQIPNQT LVQNNPSGTG TNPACYAPPV KDIAVPVIHN NFPNAKVDQP  180
HGNYNSGGAE TLPEQGGRKV EKNMSSGVNN EGMDGIFWGN MSDNFPVFDD WIWTEEAISL  240
DLPVVAYQGI FDHGFVDGNC WETLHRPNGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1547103360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388157.21e-158dehydration-responsive element-binding protein 2D-like
TrEMBLA0A498J8W41e-120A0A498J8W4_MALDO; Uncharacterized protein
STRINGXP_008366770.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-37ERF family protein