PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000138651
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 352aa    MW: 39414.8 Da    PI: 8.5571
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000138651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-19128181356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++++eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  MDP0000138651 128 KKRRLSSEQVKALERSFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 181
                    45689************************************************9 PP
2HD-ZIP_I/II132.22e-42128219293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    kkrrls+eqvk+LE+sFe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy+aLk+ yd lk++ ++Le+++++L+e+l++
  MDP0000138651 128 KKRRLSSEQVKALERSFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYSALKADYDGLKHNYDSLERQNKALAEKLSQ 219
                    9**************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.783123183IPR001356Homeobox domain
SuperFamilySSF466892.18E-19124185IPR009057Homeodomain-like
SMARTSM003896.2E-19126187IPR001356Homeobox domain
PfamPF000466.8E-17128181IPR001356Homeobox domain
CDDcd000866.71E-16128184No hitNo description
Gene3DG3DSA:1.10.10.601.1E-20130190IPR009057Homeodomain-like
PRINTSPR000311.1E-5154163IPR000047Helix-turn-helix motif
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5163179IPR000047Helix-turn-helix motif
PfamPF021839.5E-15183224IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MPPCASSFAA PAASSQSPPS ATLTTQKKKV FTYANLQTLK PESPKPISSS NSLKWVSVFS  60
AYSRINSRDR RWELKRFGSS ESLGALVSNF PSKEEGKLAK GKYGYSKEFQ AMLDSLEQED  120
IGEEMSGKKR RLSSEQVKAL ERSFEVENKL EPERKVKLAE ELGLQPRQVA IWFQNRRARW  180
KTKQLERDYS ALKADYDGLK HNYDSLERQN KALAEKLSQL KAKLCTEGAE SNGSAKEESP  240
ISTCKSSENI EVDLFKNLKT KDGSSDSDSN EVLMKEESNG NSSLGYNNNN NNNNNSISSN  300
SMVNWFQLSE SRSVAAGKGF QGQLVRMEEQ SLFTTDDSCN FFSVDQAPSL HW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175183RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.110680.0bud| cell culture| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373110.10.0homeobox-leucine zipper protein ATHB-6-like isoform X1
TrEMBLA0A498JCE81e-179A0A498JCE8_MALDO; Uncharacterized protein
STRINGXP_008373110.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-56homeobox protein 6