PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000138447

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 103aa MW: 11792.9 Da PI: 10.1655

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000138447	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51	1.8e-16	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k i+nk +rqv fskRr ++K A+ LSvL + e ++i+s + +lye++s MDP0000138447 9 KLIDNKLRRQVMFSKRRSELIKMAHKLSVLGGEELGLVILSAKKRLYEFCS 59 569**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.75	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.5E-19	1	74	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-17	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-13	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MGRGKVELKL IDNKLRRQVM FSKRRSELIK MAHKLSVLGG EELGLVILSA KKRLYEFCSG 60 ESEMFGMLIR FDGADPFRPH CPSRLSNPCS PPSDFNRVIF FET

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14463	5e-64	bud\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor active in inflorescence development and floral organogenesis.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB524589	6e-54	AB524589.1 Pyrus pyrifolia var. culta FLC mRNA for flowering locus C-like protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028965252.1	3e-24	truncated transcription factor CAULIFLOWER A-like
Swissprot	O04067	1e-18	AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBL	D4QDZ2	7e-24	D4QDZ2_PYRPY; Flowering locus C-like protein
STRING	XP_008347077.1	2e-63	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	2e-12	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	MDP0000138447

Publications ? help Back to Top
Bonhomme F,Sommer H,Bernier G,Jacqmard A Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis. Plant Mol. Biol., 1997. 34(4): p. 573-82 [PMID:9247539]