PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000137826
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 194aa    MW: 21231.9 Da    PI: 9.6727
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000137826genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00174668123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C++ F++   L  H  +H
  MDP0000137826 46 FECKTCNRQFPSFQALGGHRASH 68
                   89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.65E-94468No hitNo description
PfamPF139123.3E-134570IPR007087Zinc finger, C2H2
SMARTSM003550.164668IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SuperFamilySSF576678.65E-995122No hitNo description
PfamPF139122.2E-1099124IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642100122IPR007087Zinc finger, C2H2
SMARTSM003550.33100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MKRSITDMRE LDHGLTMANC LMLLSRGINY NANQYDSFSV SPNRVFECKT CNRQFPSFQA  60
LGGHRASHKK PRLTGSSGEG NSNSSDQSLS QGSPPKPKTH ECNICGLEFP IGQALGGHMR  120
RHRAALSGSN TTSNVHERYS SSNSLNPQPA QVFQVLKKTN SGRRAMCLDL NLTPLENDLE  180
TLQLGKAAPL VGFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370922.11e-143zinc finger protein ZAT12-like
TrEMBLA0A498KN701e-141A0A498KN70_MALDO; Uncharacterized protein
STRINGXP_008370922.11e-142(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-38C2H2 family protein