PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000137704
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 606aa    MW: 67839 Da    PI: 5.967
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000137704genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30277336159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r++ed +++++tYeg+Hnh+
  MDP0000137704 277 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCQEDMSILITTYEGTHNHP 336
                    58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-32262338IPR003657WRKY domain
SuperFamilySSF1182901.7E-27270338IPR003657WRKY domain
PROSITE profilePS5081129.677272338IPR003657WRKY domain
SMARTSM007744.1E-37277337IPR003657WRKY domain
PfamPF031063.8E-27278336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MGMREQEKDL DIDLSLQIDA KEEKREEGVD DEEEEDDHRV DDGVEEAAAE EKEDELEPRV  60
QNNKLKTTEA GAGEEEDDDA SVVETSLQEN NMKTDQELSV LQMEMSRMKE ENKVLRKVVE  120
QTMKGYYDLQ MKFTVIHQSN QNKDPQTFLS LDGNDPNATQ GPKMSSKXLD ISHRSPVPSP  180
KRDEVTEESQ LGLSLRLQTS SATTAXQLRG REEEDDDKEE INNKEGLTRT ASLTSSSVQL  240
QNKLQRTELA GITSHGAPHP NRKARVSIRA RCEYATMNDG CQWRKYGQKI AKGNPCPRAY  300
YRCTVAAGCP VRKQVQRCQE DMSILITTYE GTHNHPLPVX ATAMASSASA AASCMLLDSS  360
NHHLADGTPS NYTQVSLPYY NSNTPHNMMN LNPSSHSSSN YRIINPHDPS KGLVLDLTNN  420
FYDTITSQPQ NIPMAMGSSS SSAAPGFSSS WMMSNTSSRS ANYXTSNSLT NRLLANGSRS  480
SGMALADDQK GNWRSGEENM SLLAENPLLW RNQMKAMNSR NKLKMIHFKV IILTRRAAIP  540
KWKERQLVEE VRPPRPKKSL LLRKVDASRV ASGFLALDLL GMSFPQKIMS FFAEELKVVF  600
FVAVER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21264338174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339282.30.0probable WRKY transcription factor 9
TrEMBLA0A498HVS60.0A0A498HVS6_MALDO; Uncharacterized protein
STRINGXP_008339282.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-59WRKY DNA-binding protein 9