PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000137501
Common NameHD23
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 360aa    MW: 40829.1 Da    PI: 5.0099
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000137501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.69e-083103422254
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +yp++e++++L +++gL+ +q+ +WF N+R +
  MDP0000137501 310 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 342
                    69*****************************87 PP
2ELK22.43e-08263284122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELKh+L ++Y+++++++++E++
  MDP0000137501 263 ELKHELEQGYKEKIVDIREEIL 284
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.8E-1796140IPR005540KNOX1
PfamPF037909.4E-1698135IPR005540KNOX1
SMARTSM012562.1E-22152207IPR005541KNOX2
PfamPF037911.2E-16157206IPR005541KNOX2
PROSITE profilePS512139.69263283IPR005539ELK domain
SMARTSM011880.0049263284IPR005539ELK domain
PfamPF037891.0E-4263284IPR005539ELK domain
PROSITE profilePS5007111.758283346IPR001356Homeobox domain
SMARTSM003894.1E-11285350IPR001356Homeobox domain
SuperFamilySSF466893.59E-16285348IPR009057Homeodomain-like
CDDcd000863.56E-11286347No hitNo description
Gene3DG3DSA:1.10.10.601.7E-25290349IPR009057Homeodomain-like
PfamPF059209.5E-18303342IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAFHHQQQQT PHEMAFHSFA EDQPPLSGAL TWLNNAAFRQ QNTSFGGLHD AGRNDDVVIS  60
XSGKSSSCSD RNRREISGYD GGEEEEGEDE LECESARFKA DIVGHPLYEQ LVSAHVSCLR  120
IATPVDQLPR IDEKLLQSQR VVDNYSALRA NGDVGVMDEK ELDLFMTNYV LLLCSFKEQL  180
QQHVRVHAME AVMACWELDQ SLQSLTGVST GEGTGATMSD DDDQLDSDIN SYDGSLDGPD  240
TMGFGPLVPT ESERSLMERV RQELKHELEQ GYKEKIVDIR EEILRKRRAG KLPGDTTSVL  300
KSWWQSHSKW PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNISS TSVLKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339359RKRNWHSNISSTSVLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.65460.0bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384696.20.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-159KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A498KJU70.0A0A498KJU7_MALDO; Uncharacterized protein
STRINGXP_008362878.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-150KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]