PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000137305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GATA | ||||||||
Protein Properties | Length: 351aa MW: 37950.9 Da PI: 6.1708 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.1 | 2.1e-17 | 254 | 287 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + MDP0000137305 254 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 287 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.5E-75 | 1 | 336 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.424 | 248 | 284 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.3E-17 | 248 | 298 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-15 | 252 | 311 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 252 | 285 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.69E-14 | 253 | 300 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 254 | 279 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.4E-15 | 254 | 287 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MIGQSFIDDI DCGSLFDTID DLLDFPTDDV ESALGPAPDC NAAFNSSSLW PSQSXSLQPP 60 NEAVFSGNSA SDLSAELDVP IEDIVQLEWL SNFCEDSFSG GSLTINKPDN SFVNNESSHR 120 QFQTSSPISV LDSSSSCSVE KXVPQSPGPV VPGKRGRARS KRPRPATFNP RPAIQLISPA 180 SSVTEAEALQ HQPLLPPKLH SDSENFAESR PVIKIPXQAS GEQKKKKKIK LTLPQAPAEG 240 NQSSGTTQGA VRKCLHCEIT KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF 300 VPALHSNSHK KVIEMRNKGG ELVPFGETAR AMTETPELIP NANHSISLDY M |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 164 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.5097 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452508 | 1e-58 | AM452508.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X231684.10, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008347480.2 | 0.0 | GATA transcription factor 8-like | ||||
TrEMBL | A0A498JKE4 | 0.0 | A0A498JKE4_MALDO; GATA transcription factor | ||||
STRING | XP_008347480.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4887 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 2e-42 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000137305 |