PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000137126
Common NameC2H2L9
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 472aa    MW: 49527 Da    PI: 8.917
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000137126genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-052244123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  MDP0000137126 22 FVCEICSKGFQRDQNLQLHRRGH 44
                   89*******************88 PP
2zf-C2H211.30.00198120123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H + +
  MDP0000137126  98 WKCDKCSKKYAVQSDWKAHSKIC 120
                    58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-52144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.58E-72144No hitNo description
SMARTSM003550.0362244IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8872244IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM003552406393IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-486119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.58E-793118No hitNo description
SMARTSM0035515098118IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MPDPDAEVIA LSPKTLLATN RFVCEICSKG FQRDQNLQLH RRGHNLPWKL RQRSSKEVKK  60
RVYVCPEASC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC  120
GTREYKCDCG TLFSRRDSFI THRAFCDALA EESARXPTTT SATAAATTAA ATAVNLNSES  180
DPRAQSVNSP PQPLPSPPPP AAAPPQPTTS SVPSQSAGVL SSSPPTQSPV IQKPKREDSX  240
SSNSSSSNGS TSSGVFASLF ASSTTSASLQ PPQQPAFTDL IRAMGHPDQS TNLAPSSSME  300
PISLGLSTSH GSSIFESAGQ ERRQYAPPPQ PAMSATALLQ KAAQMGAAAT NASLLRGFGI  360
MSSSTSSTQQ ESMQWNQRPA EPDNVSVAAG LGLGLPCDGG SGWKELMMGS PPMFGPKQTT  420
LDLLGLGMAA GNNPSSGLSA LITSIGGGLD VAAAAASYGG GEYSGKDLAR SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3694155364Zinc finger protein JACKDAW
5b3h_F5e-3694155364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.98540.0flower| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8601171e-103JQ860117.1 Pyrus pyrifolia ENY mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028949726.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ71e-160IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLD9ZIU50.0D9ZIU5_MALDO; C2H2L domain class transcription factor
STRINGXP_009356670.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-100indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]