PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000136037

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 305aa MW: 32676.7 Da PI: 8.211

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000136037	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.2	2e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q++ MDP0000136037 4 SCNGCRILRKGCSENCSIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAA 99 6********************************************************************************************* PP DUF260 92 aelallkee 100 +e++l +++ MDP0000136037 100 VEAVLKGQP 108 9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.1E-95	1	300	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.115	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.9E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLVNAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGQPIT PITSEAAAXG 120 HGPPLKAYDI RHVSKDENSA ASNDPQKVKT RYRFKRSVVK PKTNKVGSGS GSGCGSGADD 180 SAKPSCTGXC GNEFNRSTSH ESSLSHQSEV AANVDGDSKE SESMISSETA EAELFSRAEP 240 XSARKXREPX QDGELALELT LGLEPPSRAH HVVPVKKRRI EAEFGSLSSA GDGACKMELG 300 LDFVA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.5182	0.0	bud\| cell culture\| fruit\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008348114.2	0.0	LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-111	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A498J7N0	0.0	A0A498J7N0_MALDO; Uncharacterized protein
STRING	XP_008348114.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-98	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	MDP0000136037