PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000135668
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 433aa    MW: 48553.3 Da    PI: 6.5089
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000135668genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.51.6e-29243301259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++++ve+s+++p+++++tY+g+H+h 
  MDP0000135668 243 ADLWAWRKYGQKPIKGSPHPRNYYRCSSSkGCPARRQVEQSTTEPNIFIVTYTGDHTHA 301
                    699************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-30228303IPR003657WRKY domain
PROSITE profilePS5081130.79237303IPR003657WRKY domain
SuperFamilySSF1182902.09E-25240303IPR003657WRKY domain
SMARTSM007743.7E-36242302IPR003657WRKY domain
PfamPF031062.3E-25244300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MADDWDLYAV VRGCKSTTQT TRNITITAAC ITPTNPIHTP LDEFKNDPLW DLLNSDELTD  60
PLFSFTNLDD PKEANGFQEL QQSFFRNPTT TTNNDHNPTT NNTTFGPNNI IPNSPTISYF  120
GGSSGSGQHH LQHQQQQQHH HAQLQQQLQH QQHLSMPTHF TRGIPAPSFR GIYGQQQQQQ  180
KIMQPGDQNL QPRQLQTQQG FRRPKFINPA YPHPRLPTRP QRRMKTQQKK NVHEVKAEDL  240
ISADLWAWRK YGQKPIKGSP HPRNYYRCSS SKGCPARRQV EQSTTEPNIF IVTYTGDHTH  300
ARPTHRNSLA GSSRNKLSAA STSQKKPINN DSGSTAVPNP SSPTTGLPMT VQAEAVPVAN  360
KVNSDNSLDK ETEESDEEEE TDHENENENE VEDDDVMIPD MDMSDEIFLG LKELGGTSSN  420
GSGSGSFSGF CFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-17230304680Disease resistance protein RRS1
5w3x_D7e-17230304680Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017188769.10.0probable WRKY transcription factor 27
TrEMBLA0A498JJR00.0A0A498JJR0_MALDO; Uncharacterized protein
STRINGXP_009377624.11e-140(Pyrus x bretschneideri)
STRINGXP_009377627.11e-140(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1888326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.18e-45WRKY DNA-binding protein 27