PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000135389
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HB-other
Protein Properties Length: 349aa    MW: 39490.5 Da    PI: 4.3895
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000135389genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.5e-08282329653
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
       Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                    +++k q+e+Le +++k++ p+ ++     + ++L+ ++V  WF  +R 
  MDP0000135389 282 RLKKAQVETLEGVYRKTKRPTNAMVSSXVHVTNLPRKRVVKWFEDKRS 329
                    67899***************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.507274334IPR001356Homeobox domain
SMARTSM003890.005280338IPR001356Homeobox domain
SuperFamilySSF466892.74E-7280331IPR009057Homeodomain-like
CDDcd000861.36E-4280328No hitNo description
Gene3DG3DSA:1.10.10.602.0E-7281339IPR009057Homeodomain-like
PfamPF000463.8E-5282329IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAFASALDTP KGLHFLPLPS SSRHERSPTN LVLPRHFPTR FSSTIALARR RNHRAEVAPS  60
RTKIKKRSLG NKEVKEVEEE DVDEDAIDAL FRLLEEDLKN DDASFDDEDL TEEELAKLEQ  120
EVAEALGVDG DDDDDEEEEE EEVEDDDGVV ESYAEEDEEV EEEEEEETPV KLKTWQMRRL  180
AAALKVGRRK TSIKTLAAEL CLDRAVVLEL LREPPPSLLI MCXXLPDEPA TVVSVSQPNS  240
VETVVETTGE TXVETTTDSV ELESAAXVPV HARQQKFSAQ KRLKKAQVET LEGVYRKTKR  300
PTNAMVSSXV HVTNLPRKRV VKWFEDKRSE DXVPDSRQPY QRPIPNTVL
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028962908.10.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
SwissprotQ8H0V56e-64OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A498JBA10.0A0A498JBA1_MALDO; Uncharacterized protein
STRINGXP_008359672.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101813138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.14e-51overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]