PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000135135
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HB-PHD
Protein Properties Length: 771aa    MW: 87059.5 Da    PI: 9.5976
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000135135genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.72.7e-10482526953
                    HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
       Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                    ++ +e L ++F +n  ps++ +  L+k+lgL+ ++V+ WF+N R+
  MDP0000135135 482 RKAVEKLRQVFSENELPSRAVKDNLSKELGLNPDKVSKWFKNARY 526
                    567899*************************************97 PP
2PHD35.62.1e-12233288151
                    SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
            PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                    +C+ C+ +++  +++++lCd +C+ +fH+kCl+++l++e++p+g   w+C+ C++k
  MDP0000135135 233 FCAQCKLNEAlpDNDIILCDgTCNCAFHQKCLDPPLDTENIPRGeqGWFCKFCECK 288
                    699999955455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.4E-13225291IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.4E-11229289IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.131231288IPR019787Zinc finger, PHD-finger
SMARTSM002493.9E-6233286IPR001965Zinc finger, PHD-type
CDDcd155044.07E-29233285No hitNo description
PfamPF006281.5E-9233288IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590234285IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466894.28E-10468531IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-12469525IPR009057Homeodomain-like
PROSITE profilePS5007112.228471531IPR001356Homeobox domain
SMARTSM003896.8E-9473535IPR001356Homeobox domain
CDDcd000866.31E-8479526No hitNo description
PfamPF000461.1E-7482526IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MDTLVKNMRG SGKKSNLKES GKSGYSSSVA KLISSPSFKK GVKVPRVKKL RPKSSKTIIA  60
SALSKKRGAD SSSKASTSRN NDTNKKLMSR KEFHKVHDTD SSKKPSSVKL QDHKLSDNGS  120
DEKGEKRRRK KKPKKDKVEL DETSRLQRRT RYLLIKIKLE QNLIDAYAGE GWKGQSREKI  180
RPEMELRRAN KQILNCKLGI RDAIQQLDSL SSVGSIADSF IAPDGSVSHE HIFCAQCKLN  240
EALPDNDIIL CDGTCNCAFH QKCLDPPLDT ENIPRGEQGW FCKFCECKME ILELVNAHLG  300
TCFPMNSGWQ DVFKEEAAFP DGKNSLLNPD EEWPSDDSED DDYKPERNVN SCSISRGGSD  360
DNVSEEELST DVSVGSDEST DGEIVSGRRQ RRSVDYKKLY DCIFVFSYKE MFGKDGPLLE  420
QISDDEDWGP VKRKRREKES DAASTLMTLY ESERNPDVDH TEVKNIRSSD TQVRRSCFRI  480
PRKAVEKLRQ VFSENELPSR AVKDNLSKEL GLNPDKVSKW FKNARYLALK TRKEASGKDH  540
QTFTPGISKE PGYENVTGKA ADLMASDSDD DTLAETVVHS PKNVNAAFRR KHPKSLSSPL  600
RKSQQKAPSC GSPSRSNKDG KESSDDVSLK KLMNTRTKEK RANLIAGGGG DGCRVAELEM  660
ERLCKAKGRL EHMRQKLLKL QNVKAKQKSN KSLLHEHTVI YVPVAQLREK RGEISTWDLL  720
RCWKRKYVEG RNIKFVSNLK MEDELLGLDW IVYSNPIRDQ MRSGAEPQLE P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132EKRRRKKKP
2125131KRRRKKK
3126134RRRKKKPKK
4127132RRKKKP
5128135RKKKPKKD
6432437RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162640.0bud| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388572.10.0pathogenesis-related homeodomain protein-like
SwissprotP487851e-152PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A498HMK80.0A0A498HMK8_MALDO; Uncharacterized protein
STRINGXP_008388572.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-149pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]