PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000135063
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 443aa    MW: 49664.2 Da    PI: 6.5096
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000135063genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41.1e-073764092154
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    k +yp++e++++L +++gL+ +q+ +WF N+R +
  MDP0000135063 376 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 409
                    469*****************************87 PP
2ELK28.72.9e-10330351122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELKh+L+++Y+++++++++E++
  MDP0000135063 330 ELKHELKQGYKEKIVDIREEIL 351
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-18165209IPR005540KNOX1
PfamPF037902.0E-16168208IPR005540KNOX1
SMARTSM012562.8E-28218273IPR005541KNOX2
PfamPF037913.4E-21222272IPR005541KNOX2
SMARTSM011886.1E-4330351IPR005539ELK domain
PROSITE profilePS512139.969330350IPR005539ELK domain
PfamPF037891.0E-6330351IPR005539ELK domain
PROSITE profilePS5007111.726350413IPR001356Homeobox domain
SuperFamilySSF466891.28E-15352416IPR009057Homeodomain-like
SMARTSM003894.7E-11352417IPR001356Homeobox domain
CDDcd000866.01E-12353414No hitNo description
Gene3DG3DSA:1.10.10.604.7E-25357414IPR009057Homeodomain-like
PfamPF059201.3E-17370409IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAYHNHLSQD LPLHHFTDQT HHQHQQYQSD QPDPNSKPPE PHHSFQPAPN WLNSALLRNF  60
TNTDTNPTNS NNANNNGGGV SNFLNLHVTA SDSAASQASN QWLSQSHRPI LHRNHSDVID  120
DVTVAGDSMI AAALSHDSAD LKPDSILNKN EGGGGDGGVM NWQNARHKAE ILAHPLYEPL  180
LSAHVACLRI ATPVDQLPRI DAQLAQSQNV VAKYSALGNG MVGDDKELDQ FMRNYVLLLC  240
SFKEQLQQHV RVHAMEAVMA CWEIEQSLQS LTGVSPGEGT SATMSDDEDD QVDSDANLFD  300
EGMEGHDSMG FGPLIPTESE RSLMERVRQE LKHELKQGYK EKIVDIREEI LRKRRAGKLP  360
GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSTSTV  420
LKSKRKRKKK AHSDSEVAII NPI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406428RKRNWHSNPSTSTVLKSKRKRKK
2423429KRKRKKK
3424428RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.7930.0fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ719800.0Z71980.1 M.domestica mRNA for knotted1-like homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378415.20.0homeobox protein knotted-1-like 3 isoform X2
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A498JDK60.0A0A498JDK6_MALDO; Uncharacterized protein
STRINGXP_008378414.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-180KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Watillon B,Kettmann R,Boxus P,Burny A
    Knotted1-like homeobox genes are expressed during apple tree (Malus domestica [L.] Borkh) growth and development.
    Plant Mol. Biol., 1997. 33(4): p. 757-63
    [PMID:9132068]