PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000134241
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26957.5 Da    PI: 9.1747
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000134241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-1972125356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+ ++t++qle Le+ Fe++ +++  ++ +L+++lgL+ rq+ vWFqNrRa++k
  MDP0000134241  72 KKKRLTSDQLESLERSFEEEIKLDPVRKMKLSRELGLQPRQIAVWFQNRRARWK 125
                    56679************************************************9 PP
2HD-ZIP_I/II118.24.6e-3872161291
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    kk+rl+++q+++LE+sFeee kL+p rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+++L++ev +L++ l
  MDP0000134241  72 KKKRLTSDQLESLERSFEEEIKLDPVRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDVVSKEKQKLQEEVMKLKTIL 161
                    9*************************************************************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-1956129IPR009057Homeodomain-like
PROSITE profilePS5007116.92567127IPR001356Homeobox domain
SMARTSM003893.0E-1669131IPR001356Homeobox domain
PfamPF000461.8E-1672125IPR001356Homeobox domain
CDDcd000865.07E-1572128No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2074134IPR009057Homeodomain-like
PRINTSPR000314.1E-598107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000314.1E-5107123IPR000047Helix-turn-helix motif
PfamPF021838.6E-8127161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDWKTSLRHL VSRPEPSSGF LYNYNCYDHY SPGMEMKHQA MISETSSKGG LVPGLMDRNN  60
HQSGYGCSSQ DKKKRLTSDQ LESLERSFEE EIKLDPVRKM KLSRELGLQP RQIAVWFQNR  120
RARWKAKQLE RLYDALKQEY DVVSKEKQKL QEEVMKLKTI LRDEVARKQV STRYTEISGE  180
ETVESTSVAI RSANKAGGKN QHQIAECNYL YINIEEYNPV SPPFWGNLPS YP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARWKAKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351665.11e-175homeobox-leucine zipper protein ATHB-22-like isoform X1
SwissprotQ9LZR03e-53ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A498HZ991e-172A0A498HZ99_MALDO; Uncharacterized protein
STRINGXP_008351665.11e-174(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-55homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]