PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000134067
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 528aa    MW: 60401.2 Da    PI: 6.4633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000134067genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07185208327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++C++f + G+Ck+G++C++ Hg+
  MDP0000134067 185 VKICHYFNK-GFCKHGSSCRYYHGQ 208
                    679******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.535182209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5182208IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4182208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5183208IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-5184208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5164410.227230313IPR025605OST-HTH/LOTUS domain
PfamPF128728.2E-14232308IPR025605OST-HTH/LOTUS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MDFSVSTTAV YNRIQKLEPE NATKIIGFLL LQDHGEQDMA RLAMAPEHLI HQVILTAKAE  60
LQQLATKSVS SPLSPSFNRT TGAFAPYSPI SSRHFSSPAA FQVPTSFWDR QLIDRHSXDF  120
MPLGYPDSIT VLQNQAQFFS LEDQMESVNS EISGFSNDYF YRDAEMCSLS ARNGRRISNL  180
GDFQVKICHY FNKGFCKHGS SCRYYHGQLI SDSFYGNDGL NDDHVLSPGS REKLEWEITE  240
LLRSRRGIPI SIASLPMMYY ERYGKSLQAE GYLTESQRHG KAGYSLTKLL ARLGNSIRLI  300
DRPHGQHAVI LSEDSAKYME NRNEKGDPGP IVSGSRQIYL TFPSESTFSE DEVSNYFNTF  360
GPVEDVRIPC QQKRMFGKYQ ERMEPTAYYS PHYTDMESEF YSMSRSCDNS RLLRKKLLEE  420
QEYALEIERR LAELRFVQKP VASQPQSSYF MDGLKVSEVH ADNFNFPSAE CFNNLLYALN  480
SGSTSDDKPK HTETNYTDHD RXCRCFIFPF IVAVKDLISR IARLQHDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955923.10.0zinc finger CCCH domain-containing protein 18-like isoform X1
RefseqXP_028955925.10.0zinc finger CCCH domain-containing protein 18-like isoform X1
TrEMBLA0A498K5570.0A0A498K557_MALDO; Uncharacterized protein
STRINGXP_008364181.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF288177