PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000133936 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 24368.3 Da PI: 4.39 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.8 | 1.8e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+++C++apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdPvyG+v+ i +lqqq++ l++e++ MDP0000133936 7 SCGACKFLRRKCTSECIFAPYFCYDQaADHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITMSYEALARMRDPVYGCVSQIYALQQQVAYLQEEIE 102 6************************9789******************************************************************9 PP DUF260 96 llkee 100 +l+++ MDP0000133936 103 TLGSQ 107 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.914 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-37 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAGLGSSCGA CKFLRRKCTS ECIFAPYFCY DQAADHFAAV HKVFGASNVS KLLLHLPVQN 60 RSDAAITMSY EALARMRDPV YGCVSQIYAL QQQVAYLQEE IETLGSQMVD FATCHPSNSN 120 TFVDQLQVFS QHDAVDTQHI QNQLPESPIF PHIGSAAANQ GFNGEMDIEM PPLQEWEEVN 180 LFGDHSTPDP LKRFLEGMEQ DNLGNNPWPN ETATWDLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-35 | 3 | 112 | 7 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-35 | 3 | 112 | 7 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008352160.1 | 1e-165 | LOB domain-containing protein 33-like | ||||
Swissprot | Q9LHS8 | 3e-56 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A498KMD2 | 1e-164 | A0A498KMD2_MALDO; Uncharacterized protein | ||||
STRING | XP_008352160.1 | 1e-165 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-58 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000133936 |
Publications ? help Back to Top | |||
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