PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000133918 | ||||||||
Common Name | WRKY15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 266aa MW: 29522 Da PI: 4.8866 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.8 | 6.8e-31 | 82 | 140 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY+ eHnh+ MDP0000133918 82 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVITYSAEHNHP 140 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.0E-32 | 74 | 142 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.719 | 76 | 142 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-26 | 77 | 142 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 81 | 141 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-26 | 83 | 140 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDPTFFSSNS KQIMSDQEEN DNTTSSTPEN SSDTPPPSTN FSDYSKITTS TSSPKKSARR 60 AIQKRVVSVP IKNENSNTPP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE 120 RSRVDPTMLV ITYSAEHNHP WPASRNHNNN RNISNPAAGT KPCPTPEAQQ PDHQDQDQDP 180 RFADLNNESL LVNDEYVWFA DMETTSSTVL ESPXFAESGG SDSGDMAAMV FPMGEEDESL 240 FADLGELPEY SLVFRHRGVG PQAQIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 8e-23 | 64 | 142 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 8e-23 | 64 | 142 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.6477 | 0.0 | cell culture| fruit| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU576874 | 0.0 | GU576874.1 Malus hupehensis WRKY transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028964719.1 | 0.0 | probable WRKY transcription factor 65 isoform X1 | ||||
Swissprot | Q9LP56 | 6e-77 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A498IST5 | 0.0 | A0A498IST5_MALDO; Uncharacterized protein | ||||
STRING | XP_008383606.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 3e-74 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000133918 |
Entrez Gene | 103446300 |
Publications ? help Back to Top | |||
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