PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000132774
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 177aa    MW: 19700.4 Da    PI: 8.9175
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000132774genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP87.81.3e-271995978
                   ---TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS.......EEETTT--SS--S-STTTT-------S--- CS
            SBP  9 adlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr.......fhelsefDeekrsCrrrLakhnerrrkkqa 78
                   +dls+ak+yhrrhkvC+vhska+++lv +++q fCqqCsr        h+l+e De+krsC + La+hn+rrrk ++
  MDP0000132774 19 TDLSNAKDYHRRHKVCDVHSKATKALVGNVMQLFCQQCSRgltlmdrXHALRELDEGKRSCCTGLAGHNRRRRKMHP 95
                   69************************************9644444448**************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114120.23993IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-251998IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.8E-191979IPR004333Transcription factor, SBP-box
PfamPF031101.4E-162092IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQQSSSIPNA ILFALVFFTD LSNAKDYHRR HKVCDVHSKA TKALVGNVMQ LFCQQCSRGL  60
TLMDRXHALR ELDEGKRSCC TGLAGHNRRR RKMHPDSAVN GGSLNNESGS SFAMNVKLKS  120
GILFICSFAN CELRSVVIVD RSLMGSDYTN HTLSSRSVTE AHIEDVLWLG LTYVLMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-1919921884squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353416.14e-41PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9S7P56e-31SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A498JA253e-77A0A498JA25_MALDO; Uncharacterized protein
STRINGXP_008378618.16e-67(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.15e-30SBP family protein
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]