PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000132340
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 536aa    MW: 60174.7 Da    PI: 5.9724
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000132340genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.23.7e-33240294155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r+rWt+eLHe+Fveav++LGGse+AtPk il+lmkv+gLt++hvkSHLQkYR+
  MDP0000132340 240 KARMRWTQELHEAFVEAVDHLGGSERATPKGILNLMKVEGLTIYHVKSHLQKYRT 294
                    68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.051237297IPR017930Myb domain
SuperFamilySSF466892.51E-17238294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-30239296IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-25240294IPR006447Myb domain, plants
PfamPF002497.1E-9242293IPR001005SANT/Myb domain
PfamPF143797.1E-19325371IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSEFGASKAT SSSFPLLHTH LGDKYSNLQD SFQVSSQREK TIYSMLPQAS SPGNLFSSSS  60
RPNDVHISSV PPCEQRPQNS SFIFKSRVDE NTEKSLSLPH SSHSPLSEVQ PTTLINYPEE  120
HRDISWCPDS LQEFLHFSEN VPDQNGLVDS SAGVITSEEN AGKTHWSDWD PLISFDDTLD  180
PNWELPGDVD AIDPKPKQSQ IQQHQLQIQQ HQPQIQQHQP VQSVEFHPGP EPLSSAPPTK  240
ARMRWTQELH EAFVEAVDHL GGSERATPKG ILNLMKVEGL TIYHVKSHLQ KYRTARYKPE  300
SSEGPYEKVS TLVDETNPLD MKGSMGITEA LRLQVELQKR LHEQLENQRK LQLQIEEQGK  360
CLEKMFEQQR KFEDNRVKSG SSTVDDHSTP LSNIACPSPG DDKPETSKHH PDKTAISAPL  420
EDGSQDASSK AQELECLEDL DGVESGVLRT KRARNGXKKQ NSQELSRLTE TNQADRNQSL  480
KVSLCCFVNL DKLVLLRPKV KALVLPASKS EGSSFAASKK NHEFTFYVYN SQIQYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.34190.0bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388734.20.0protein PHR1-LIKE 1 isoform X1
TrEMBLA0A498IM190.0A0A498IM19_MALDO; Uncharacterized protein
STRINGXP_008388734.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.18e-79G2-like family protein