PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000132040

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YB

Protein Properties

Length: 269aa MW: 29402 Da PI: 8.2528

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000132040	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	150.8	2.6e-47	20	103	2	85
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 reqdrflPianvsrimkk lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+ +e k+ MDP0000132040 20 REQDRFLPIANVSRIMKKGLPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEEMEGEKM 103 89**************************************************************************99987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.88E-32	14	95	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	8.1E-44	16	99	IPR009072	Histone-fold
Pfam	PF00808	3.0E-27	25	89	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.4E-11	53	71	No hit	No description
PROSITE pattern	PS00685	0	56	72	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.4E-11	72	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MADSDNDSGG GGGGTREQQR EQDRFLPIAN VSRIMKKGLP ANAKISKDAK ETVQECVSEF 60 ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEEEMEG EKMTISTNTS AGTGTGMSAG 120 HGRHAVRYHR DHEREQLYVH GHGAASGSIN GMYGVMSTQS TTMMMMGHQQ HHHHEGHLYG 180 SGSRPSTGHG RPRGKNSSSS LNGKALLTGE ADLQSEVAMA TCLPPPLCWV CVSLVLQSEI 240 TMAINSYFSR VRKGIKHYKV WKQFGLQNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-39	20	106	2	88	Transcription factor HapC (Eurofung)
4g92_B	3e-39	20	106	2	88	Transcription factor HapC (Eurofung)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ379398	8e-65	FQ379398.1 Vitis vinifera clone SS0AEB10YI23.
GenBank	FQ389757	8e-65	FQ389757.1 Vitis vinifera clone SS0AEB19YM07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352424.1	1e-120	PREDICTED: nuclear transcription factor Y subunit B-3-like
TrEMBL	A0A498K2H3	1e-140	A0A498K2H3_MALDO; Uncharacterized protein
STRING	XP_009352424.1	1e-120	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF37900	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-55	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	MDP0000132040