PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000131803
Common NameGATA2
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 342aa    MW: 37077.7 Da    PI: 9.9842
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000131803genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.87.1e-19205238134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    Cs C ttkTplWR+gp+g+k+LCnaCG+++rk +
  MDP0000131803 205 CSDCSTTKTPLWRSGPRGPKSLCNACGIRQRKAR 238
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-13199239No hitNo description
SMARTSM004015.6E-19199250IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-15203238IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.413203235IPR000679Zinc finger, GATA-type
CDDcd002024.36E-14204236No hitNo description
PROSITE patternPS003440205230IPR000679Zinc finger, GATA-type
PfamPF003201.2E-16205238IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTPPPYHNLS PPSPFNLELS GDHDLQYHHL FNLEPQTSFS SSLSSPLFLT PAQVQARSDD  60
HYRKPQQFQF QLLEADHNIV PYGGSRDHDH QAIENEGGNG TVLKLSISKN GADGSGNPST  120
DHEVNTSSVK WMSSKMRMMW KMSNPDHTSS SSNSSGDKPI SMKLSSHKFE EQKPQHPSSQ  180
LGAEMISCSN NSSNNMSSLP IIRVCSDCST TKTPLWRSGP RGPKSLCNAC GIRQRKARRA  240
MAAAAAAAAA SGTTLTVAAP SMKSSKVQHK DNKSRVSSTV PFKKRPYNKL TSSPSSRGKS  300
KKLCFEAPTA AAATTALQRV FPQDEREAAI LLMALSCGLV HG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.167100.0bud| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281002.10.0endothelial transcription factor GATA-2
TrEMBLD9ZIY90.0D9ZIY9_MALDO; GATA domain class transcription factor
STRINGXP_008387869.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-26cytokinin-responsive gata factor 1