PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000131659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HB-other | ||||||||
Protein Properties | Length: 156aa MW: 17866.7 Da PI: 7.9657 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.7 | 4.7e-09 | 72 | 115 | 3 | 46 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv 46 k+ ++t++qle Le+ Fe++ +++ ++ +L+++lgL+ rq+ v MDP0000131659 72 KKKRLTSDQLESLERSFEEEIKLDPVRKMKLSRELGLQPRQIAV 115 56679************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.54E-8 | 55 | 115 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-10 | 57 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0015 | 69 | 129 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-6 | 72 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.54E-7 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MDWKTSLRHL VSRPEPSSGF LYNYNCYDHY SPGMEMKHQA MISETSSKGG LVPGLMDRNN 60 HQSGYGCSSQ DKKKRLTSDQ LESLERSFEE EIKLDPVRKM KLSRELGLQP RQIAVCANKA 120 GGKNQHQIAE CNYLXINIEE YNPVSPPFWG NXPFYP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008351665.1 | 6e-80 | homeobox-leucine zipper protein ATHB-22-like isoform X1 | ||||
TrEMBL | A0A498HZ99 | 1e-78 | A0A498HZ99_MALDO; Uncharacterized protein | ||||
STRING | XP_008392605.1 | 2e-79 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 3e-18 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000131659 |