PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000130825
Common NameMdh1
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 851aa    MW: 91804.9 Da    PI: 7.7654
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000130825genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.65.1e-096226552154
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    ++ryps +++  LA+++gL+ +qV++WF N R +
  MDP0000130825 622 QSRYPSDADKHLLARQTGLSRNQVSNWFINARVR 655
                    689*****************************88 PP
2BELL95.64.4e-31436522172
           BELL   1 erqelqkkkakLlsllee...............VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    +r e+q++k+kLls+++e               Vd+rY++y+eq+q+v+++F+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+
  MDP0000130825 436 DRIEHQRRKVKLLSMIDEasshhhityrkvvmnVDRRYNHYCEQMQMVVNAFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAAQL 522
                    58899**********9976666666666666669**************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-82358520IPR006563POX domain
PfamPF075263.9E-49363519IPR006563POX domain
Gene3DG3DSA:1.10.10.601.3E-23575665IPR009057Homeodomain-like
PROSITE profilePS5007113.038599659IPR001356Homeobox domain
SMARTSM003898.5E-8601663IPR001356Homeobox domain
SuperFamilySSF466891.41E-12613666IPR009057Homeodomain-like
CDDcd000862.39E-9622660No hitNo description
PfamPF059201.6E-12625655IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MGIVTLPPLP PPPPKGNLHH RHHSIDSENY SNPPNSMSQD YHQGIFTFSN GFERSAMTTH  60
QEQQQQQQHH LAQQIRREKL RVQGFETPPP PPLVGLNEEE SSGLPAYETA GMLSEMFNYP  120
PGGGPVGAAE LLEHPMSANY RMMPRPQQAA AVSAAADWYG RVGGGGLGPL GDSKNQHHHQ  180
ISTINADSAA AMQLFLMNPS QPRSPSPPPS HTTSSTLHML LPNPSTTTNS LQGFAAASGG  240
GAFGQFTWVP ESHQGHEAGG NTAGGGGEIG GVVEGQGLSL SLSTSLQHLE AAKAEEFRMG  300
SDSASGLLYY NNQGDHQHQG SNPQYKNLGS HHHQALHSLQ QGGVVGGHHV SFGSSSSFGV  360
VNVLRNSKYV KAAQELLEEF CSVGRGQLKK NKFGGSTSGR QNTTTNPSSN PASGGGGDGG  420
ASSSSSKDVP PLSAADRIEH QRRKVKLLSM IDEASSHHHI TYRKVVMNVD RRYNHYCEQM  480
QMVVNAFDLV MGFGAAVPYT ALAQKAMSRH FRCLKDAIAA QLKHSCELIG EKDGAGTSGI  540
TKGETPRLKL LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPLER  600
KRKERRFYVV AGLLRLVVVV VQSRYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM  660
VEEMYQQEAN EEEEVGEGGV GGATSAAADQ ERERNSNAGL AAQTPTPTTT TTTTTKNSPA  720
SKRSDINASE NDPSLVAINR HQQQHHHHPM MATTTSTTVA SPAYQCFPAA ASDDTCRSYG  780
TTSANANIAA HHDHQNSSNI DSSTTLISFG TTTAAGDVSL TLGLRHAGGG GGNNMPDKTS  840
SSFSIRDFGG C
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29450.0bud| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0537690.0AF053769.1 Malus x domestica homeodomain protein (Mdh1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315679.10.0BEL1-like homeodomain protein 2
RefseqXP_009379163.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_018507945.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_028963692.10.0BEL1-like homeodomain protein 2 isoform X1
TrEMBLA0A498KII20.0A0A498KII2_MALDO; Uncharacterized protein
STRINGXP_009379163.10.0(Pyrus x bretschneideri)
STRINGXP_008344278.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-144BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Dong YH, et al.
    MDH1: an apple homeobox gene belonging to the BEL1 family.
    Plant Mol. Biol., 2000. 42(4): p. 623-33
    [PMID:10809008]