PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000130160
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 401aa    MW: 43856.5 Da    PI: 9.1844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000130160genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-0896121227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    kt+lC+ +     Ck+Gd+C+FaHg+
  MDP0000130160  96 KTRLCNKYNTVEGCKFGDKCHFAHGE 121
                    8*********99************96 PP
2zf-CCCH33.85.8e-11259284127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++t+lC +f + GtC +GdrC+FaHg+
  MDP0000130160 259 FRTKLCENFTK-GTCTFGDRCHFAHGQ 284
                    589********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356223456IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.3333757IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-1492125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-893125IPR000571Zinc finger, CCCH-type
SMARTSM003560.002394121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.53594122IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-596121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.6E-14156236IPR004088K Homology domain, type 1
SMARTSM003228.3E-10164234IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.0E-14164234IPR004088K Homology domain, type 1
PROSITE profilePS5008413.565165229IPR004088K Homology domain, type 1
CDDcd001051.68E-12167229No hitNo description
PfamPF000135.1E-10167231IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.1E-15256288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-9257288IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7258284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.99258285IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8259284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MESFQPGIGS KSKPCTKFFR LQNRSLSFEA GXFMXGLCKN TSGCPFGEGC HFLHYVPGGI  60
KAVSQMTGSN PTHPPPPRNS AAPPSFPDGS SPPAVKTRLC NKYNTVEGCK FGDKCHFAHG  120
EWELGRPTAQ SYEDPRAGAG FPGRMGGRME SAPPAHGAVA SFGATATAKI SVDASLAGAI  180
IGKNGVHSKQ ICRVTGAKLS IREHETDHKL RNIELEGTLD QIKDASAMVR ELIGNVSSGA  240
GPHNMRNPAM SASSPASNFR TKLCENFTKG TCTFGDRCHF AHGQEELRRS LFTRNYAGTL  300
RISSFFKNKI KNKRFKVPTL ICINESCKEC ELYCLNLFHS YSFHTSCSEK NKHFGDPQKG  360
KRLQQILFWQ ECKAIDRCID VEESLVVEVH LRSGIPRAAV V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.138120.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375050.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-102C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A498K8X90.0A0A498K8X9_MALDO; Uncharacterized protein
STRINGXP_009375050.10.0(Pyrus x bretschneideri)
STRINGXP_008344684.10.0(Malus domestica)
STRINGXP_008363342.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-63C3H family protein