PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000129357
Common NameHSF8
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 383aa    MW: 43187.4 Da    PI: 7.6448
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000129357genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.8e-36251172103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i
  MDP0000129357  25 FLTKTYQLVDDPATDHIVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEI 111
                    9*****************************************************************99.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r+k++
  MDP0000129357 112 HRRKTA 117
                    ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.7E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.04E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.0E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MALMIDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGDDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPH  120
QVGLSHHHHH HSQLGMNGHH HHPGFFPFPS PGSISPSDSD EQPNWCDSDS PPLLSPTGGI  180
NTNINSNNNN FMNINNNNTT VAGLAEDNER LRRSNTMLMS ELAHMRKLYN DIIYFVQNHV  240
KPVAPSNSYP SSMLLCNPQP PKHNGPNSNL NQLLGYYPAA PPPNAKQNPH HIMNSSSPMS  300
NTTSKSSSVT ILEDHHQQPP SGNNGCKNTK LFGVPLLHSK KRLHPEEYGS NNHHGNNMME  360
ASKARLILEK DDLGLHLMPP SRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-212111626131Heat shock factor protein 1
5d5v_B2e-212111626131Heat shock factor protein 1
5d5v_D2e-212111626131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302470.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768815e-79AK376881.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3143C10.
GenBankBT0541485e-79BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288049.10.0heat stress transcription factor B-4
SwissprotQ9C6351e-118HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLD9ZJ320.0D9ZJ32_MALDO; HSF domain class transcription factor
STRINGXP_008393792.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-103heat shock transcription factor B4