PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000129029

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YA

Protein Properties

Length: 217aa MW: 23892.8 Da PI: 10.0833

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000129029	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	95.7	5.3e-30	50	105	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RRq+Rak+ e++ ++ rkpy+heSRh+hA+rRpRg+gGrF MDP0000129029 50 GPIYVNAKQYHGIMRRRQSRAKAVIENRA-ARLRKPYMHESRHRHAMRRPRGCGGRF 105 69*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-32	47	108	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.692	48	108	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-26	51	105	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-23	51	73	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-23	82	105	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MDNQPRDGQK SQAAISLQSS PGKYHGHFEL GFSQPVGRIM LPLNLTEDEG PIYVNAKQYH 60 GIMRRRQSRA KAVIENRAAR LRKPYMHESR HRHAMRRPRG CGGRFLNTKT MNNGDKGTEG 120 KQVGDGQLFR LSGSQSSEVL QSDSGTLNSS KETNGSISNI SGSEVTSMYS RGDLDCFSIN 180 HLGPSLHSLS DMRDSARGMV IPTKWVAAGD NCCNLNV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-18	49	113	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	98	RHRHAMRRPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008387119.1	1e-150	nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A498ICE4	1e-155	A0A498ICE4_MALDO; Uncharacterized protein
STRING	XP_008350234.1	1e-151	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	8e-50	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	MDP0000129029