PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000128581
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family DBB
Protein Properties Length: 359aa    MW: 39429.3 Da    PI: 5.7841
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000128581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.92.4e-09443437
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                   + C+ +++  ++lfC+ ++ +lC +C +++H        H
  MDP0000128581  4 KLCDSCQSATATLFCRADSAFLCVNCDSKIHAAnklasrH 43
                   58*****************************554555555 PP
2zf-B_box27.94.9e-094691342
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    + C+ +e+ +++  C+ ++  lC +C   +H+       H++vp+
  MDP0000128581 46 VWLCEVCEQAPAHVTCKADDAALCVTCDRDIHSAnplssrHDRVPV 91
                   689*****************************66899999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-16148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.58148IPR000315B-box-type zinc finger
PfamPF006437.4E-7443IPR000315B-box-type zinc finger
CDDcd000211.63E-9548No hitNo description
PROSITE profilePS5011910.5094491IPR000315B-box-type zinc finger
PfamPF006434.0E-74691IPR000315B-box-type zinc finger
CDDcd000212.57E-84791No hitNo description
SMARTSM003364.2E-104991IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MASKLCDSCQ SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHPRVWLCE VCEQAPAHVT  60
CKADDAALCV TCDRDIHSAN PLSSRHDRVP VTPFYDSVNS AAXSVPVVKS VVNFLDDRYL  120
SDVDGETEVS REEAEAASWL LPNPKAMENP DLNSGQYLFQ EMDPYLDLDY GHVDPKLEEA  180
QEQNSCGADG VVPVQSKNMQ PLLVNDQSFE LDFSAGSKPF VYGYHHARCL SQSVSPLNFL  240
RYQTDPKKIL HSISDPLLCA SGIIVVXGHQ RRAGWQRGDR CCGDIATGGP ALVRGSRGEG  300
AEVQREAEEP KVREDDTVRF EKSVRGNSAA NQRQVREAHG GGDRSRXDVP LRRRSVVLG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29300.0bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6728790.0EU672879.1 Malus x domestica CONSTANS-like 2 (COL2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315935.11e-173zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T93e-99COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLQ9ZTK71e-172Q9ZTK7_MALDO; COL domain class transcription factor
STRINGXP_008386560.11e-173(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.19e-96CONSTANS-like 4