PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000128464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 342aa MW: 36720.4 Da PI: 9.6412 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.7 | 2.1e-32 | 244 | 300 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dD ynWrKYGqK vkgsefprsYY+Ct+ +Cpvkkkver ++++ei+Y+g+Hnhe MDP0000128464 244 DDSYNWRKYGQKLVKGSEFPRSYYKCTHMNCPVKKKVERIP-SGEITEIIYKGQHNHE 300 8****************************************.9**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-28 | 234 | 302 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.583 | 238 | 302 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-26 | 240 | 302 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-35 | 243 | 301 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-25 | 244 | 300 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MTAKTQDSNR VAVSAPPPQK QPQRPVITLP PRPSAEALFS GGSGASPGPM TLVSSFFENY 60 PESDFRSFSQ LLAGAMGSPV GSTRGMNFFS DSPADGLGKS GGGSEYGGEG SSGFKQSRPM 120 SLAVARPPLF TVPPGLSPSG LLNSPGFYSP QSPFGMSHQQ ALAQVTAQAA LAQSRVYMQP 180 DYQPSSVAAP TEPQACQPSL MPEEASRQLT LPSTSDTKSX VRQSSEASHS DGKYQPSSTG 240 RPADDSYNWR KYGQKLVKGS EFPRSYYKCT HMNCPVKKKV ERIPSGEITE IIYKGQHNHE 300 VPQPSKRPKD GDLNGPKPEN GLQRRVGDSN RLSEKYSFSX TT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-16 | 244 | 302 | 18 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-16 | 244 | 302 | 18 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12697 | 0.0 | fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP052939 | 0.0 | KP052939.1 Pyrus pyrifolia WRKY transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008341610.2 | 0.0 | probable WRKY transcription factor 3 | ||||
Swissprot | Q9XI90 | 8e-79 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A498HES0 | 0.0 | A0A498HES0_MALDO; Uncharacterized protein | ||||
STRING | XP_008341610.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-68 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000128464 |
Publications ? help Back to Top | |||
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