PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000128214

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TALE

Protein Properties

Length: 703aa MW: 77208.1 Da PI: 7.723

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000128214	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.5e-09	399	436	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + MDP0000128214 399 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 436 554459******************************88 PP
2	BELL	121.4	3.8e-39	263	334	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kk kL+++l+eVd+rY+qy+ q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi MDP0000128214 263 ERQEIQMKKGKLINMLDEVDQRYRQYHRQMQMVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITNQI 334 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.5E-64	192	332	IPR006563	POX domain
Pfam	PF07526	1.0E-49	197	331	IPR006563	POX domain
PROSITE profile	PS50071	12.195	377	440	IPR001356	Homeobox domain
SMART	SM00389	5.3E-9	380	444	IPR001356	Homeobox domain
CDD	cd00086	8.69E-12	380	441	No hit	No description
SuperFamily	SSF46689	7.27E-17	381	447	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.0E-29	383	447	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	397	436	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MATYFHHHRG NSSEIQASSD SALQTLVLMN PSYVPYSDTP PPPQQQQQPQ TPPAATNLVF 60 LNSAANSLTH HPSTLSHAPP SHHQQFVGIP LAQDPNSNSS QSMHHPHHDI STLHAFMPRI 120 QTQYALWNSI DPTAAARDTP RAQQGLSLSL SSQQXGWSFQ GGATEREVPS GEDIRVSSGS 180 NSSASGVTNG VSGMQSVLLS SKYLKAAQEL LDEVVNVGNG MRTELPKKGN GQQSKAAAES 240 AAGDXSVGGE GSGKRASELS TAERQEIQMK KGKLINMLDE VDQRYRQYHR QMQMVISSFE 300 QAAGIGSART YTALALQTIS KQFRCLKDAI TNQIRSANKS LGEEDSVGGK IEGSRLKYVD 360 HQLRQQRALQ QLGMIQHNAW RPQRGLPERS VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG 420 LTRSQVSNWF INARVRLWKP MVEEMYMEEV KEQEQNGSSE KMSKSNGDSA SKSTAPQDTE 480 NQTTSTFNFK QENSVNHNLA AHPSISISQA STSPTNMVRN QSGFTLIGSS ELDGITQGSP 540 KKPRSTEIMH SSNGSVPRMN IEAQEVNNEQ VSMKFGDERQ GRDGYSFMGG QTNFIGNFGQ 600 YPIGEIGRFD ADQFAPRFSG NGVSLTLGLP HCENLSMSGA HRHQTFLPNQ NIQLGRRVDT 660 GETNDQFGAI NTSASHSSAA AFENIDIQNR KRFVAQLLPD FVA

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MATYFHHHRG NSSEIQASSD SALQTLVLMN PSYVPYSDTP PPPQQQQQPQ TPPAATNLVF  60
LNSAANSLTH HPSTLSHAPP SHHQQFVGIP LAQDPNSNSS QSMHHPHHDI STLHAFMPRI  120
QTQYALWNSI DPTAAARDTP RAQQGLSLSL SSQQXGWSFQ GGATEREVPS GEDIRVSSGS  180
NSSASGVTNG VSGMQSVLLS SKYLKAAQEL LDEVVNVGNG MRTELPKKGN GQQSKAAAES  240
AAGDXSVGGE GSGKRASELS TAERQEIQMK KGKLINMLDE VDQRYRQYHR QMQMVISSFE  300
QAAGIGSART YTALALQTIS KQFRCLKDAI TNQIRSANKS LGEEDSVGGK IEGSRLKYVD  360
HQLRQQRALQ QLGMIQHNAW RPQRGLPERS VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG  420
LTRSQVSNWF INARVRLWKP MVEEMYMEEV KEQEQNGSSE KMSKSNGDSA SKSTAPQDTE  480
NQTTSTFNFK QENSVNHNLA AHPSISISQA STSPTNMVRN QSGFTLIGSS ELDGITQGSP  540
KKPRSTEIMH SSNGSVPRMN IEAQEVNNEQ VSMKFGDERQ GRDGYSFMGG QTNFIGNFGQ  600
YPIGEIGRFD ADQFAPRFSG NGVSLTLGLP HCENLSMSGA HRHQTFLPNQ NIQLGRRVDT  660
GETNDQFGAI NTSASHSSAA AFENIDIQNR KRFVAQLLPD FVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	386	444	5	63	Homeobox protein Meis2
3k2a_B	5e-16	386	444	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.8046	0.0	bud\| fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008387112.2	0.0	BEL1-like homeodomain protein 1
Refseq	XP_008387113.2	0.0	BEL1-like homeodomain protein 1
Refseq	XP_008387114.2	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A498IEG7	0.0	A0A498IEG7_MALDO; Uncharacterized protein
STRING	XP_008387112.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1627	34	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-155	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	MDP0000128214

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]