PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000128135
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 459aa    MW: 50276 Da    PI: 7.1737
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000128135genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.9e-32241296156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  MDP0000128135 241 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 296
                    68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.355238298IPR017930Myb domain
SuperFamilySSF466895.38E-17238299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-28239299IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26241296IPR006447Myb domain, plants
PfamPF002498.0E-7243294IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MASSPSELSL DCKPHSYSML LKSFGDLQAS HLHDQPQTQX LEEFLSRLEE ERLKIDAFKR  60
ELPLSMQLLT TAVEASRQQL QAYRTNNIQG QTRPVLEEFI PLKHSTSEGS EKPTNPTSDK  120
ANWMTSAQLW SQATDHNPSA TSKXQSTITS GPKEADIGFS VSPKLGLDTK QPRSYGGGAF  180
LPFSKDRSPT LRPLPELALA SPENKAEIIL EDHHENGNNN SSSAAGNCNE QAAAAAQTHR  240
KARRCWSPDL HRRFVNALQM LGGSQVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP  300
SPSPQAGGGP APQLVVLGGI WVPQEYATAT HNGPTALYSP HPGSHAPTHY CATPMPQDFY  360
ATQQHQQQLH HHTLQHQLHV YRTSTASHTQ SSPESDGRGA GDRSESIEDG KSESSSWKGT  420
ESGDHVHMNG GDQRNGGVLA ARRSEDGGDS NGSQITLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-13241294154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13241294154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13241294154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13241294154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.259850.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2950571e-64GU295057.1 Malus x domestica clone Florina BAC 36I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008343961.20.0myb family transcription factor EFM-like
SwissprotQ9ZQ851e-120EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A498KEJ90.0A0A498KEJ9_MALDO; Uncharacterized protein
STRINGXP_008343961.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-97G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]