PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000128016
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 140aa    MW: 16136.3 Da    PI: 9.204
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000128016genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF801.6e-25959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   +rienk+ rqvtf+kRr+g++KK +ELSvLCda++ + ifsstgk++ y+s
  MDP0000128016  9 SRIENKTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLFIFSSTGKMFQYCS 59
                   59***********************************************96 PP
2K-box44.75.9e-1678140869
          K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                    +  +++++e+++ el k+++e++ L+ ++ ++ GedL+ + +++L +Le+qLe s++k+R+ K
  MDP0000128016  78 RiPQHNDTEYMNAELGKMRRETHHLELSLQRYTGEDLSCIRFEDLVELEHQLEASVNKVRAXK 140
                    44678899****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.338161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-29282IPR002100Transcription factor, MADS-box
CDDcd002653.35E-37276No hitNo description
PRINTSPR004044.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-1381140IPR002487Transcription factor, K-box
PROSITE profilePS5129710.37585140IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGRGKITISR IENKTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLFIFSS TGKMFQYCSE  60
ASSVDELIQR YQVAKGIRIP QHNDTEYMNA ELGKMRRETH HLELSLQRYT GEDLSCIRFE  120
DLVELEHQLE ASVNKVRAXK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20171169MEF2C
5f28_B1e-20171169MEF2C
5f28_C1e-20171169MEF2C
5f28_D1e-20171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028964800.11e-98MADS-box protein FBP24-like
SwissprotQ9ATE52e-56FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A498IUD82e-97A0A498IUD8_MALDO; Uncharacterized protein
STRINGXP_009353975.12e-96(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.32e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]