PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000127499
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 337aa    MW: 36254.9 Da    PI: 4.4064
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000127499genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.3e-36321232102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+++++liswse+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fkkg+k ll++i
  MDP0000127499  32 FLTKTYQLVDDPSVDDLISWSEDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDFFKKGEKGLLREI 118
                    9*****************************************************************99.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  MDP0000127499 119 QRRKI 123
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-5928121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3529121IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.5E-3829121IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-213255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-3232121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-217082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-218395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSSLPAEQNG DSAPAGSGGG GGDSQRSLPT PFLTKTYQLV DDPSVDDLIS WSEDGSAFIV  60
WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW EFANDFFKKG EKGLLREIQR  120
RKISPSVSAA ATVVPPAMAA ISALAPRVSP SNSGDEQVIS SNSSPVAAPA MLACRIRSST  180
STSDVLEENE RLRKENMQLS HELTQLRGLC NNILALMTNY ASGQLDSGGG GGGGGGGGVD  240
DGRTLELSPV KEAEPAAEDA GCNGANAEAS GAEEEEEEEE EEEMRPRLFG VSIGVKRVRR  300
DEDEEEQHRE GSEGAKQEPS DGSLKRDCDA TWLELGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A5e-263212110110Heat shock factor protein 1
5hdn_A5e-263212110110Heat shock factor protein 1
5hdn_B5e-263212110110Heat shock factor protein 1
5hdn_C5e-263212110110Heat shock factor protein 1
5hdn_D5e-263212110110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.17246e-94bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369462.20.0heat stress transcription factor B-2b
RefseqXP_008369463.20.0heat stress transcription factor B-2b
RefseqXP_008369464.20.0heat stress transcription factor B-2b
SwissprotQ9T0D33e-87HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A498K0740.0A0A498K074_MALDO; Uncharacterized protein
STRINGXP_008369462.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-80HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]